RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TIMM29Q9BSF4 260 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 ULBP3Q9BZM4 244 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF768Q9H5H4 540 aaKnown RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 MAGEE1Q9HCI5 957 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 POT1Q9NUX5 634 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 LCMT1Q9UIC8 334 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 DNAJC16Q9Y2G8 782 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 HEY1Q9Y5J3 304 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 SPTA1P02549 2419 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 LRRD1A4D1F6 860 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 C3orf70A6NLC5 250 aaPredicted RBP12.2□□□□□ -0.46
CPSF3-204ENST00000489403 PDZK1P1A8MUH7 402 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 ZNF487B1APH4 448 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 MT-CYBP00156 380 aaPredicted RBP12.2□□□□□ -0.46
CPSF3-204ENST00000489403 ZNF7P17097 686 aaPredicted RBP12.2□□□□□ -0.46
CPSF3-204ENST00000489403 AMD1P17707 334 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 CASP14P31944 242 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 SEPHS1P49903 392 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 FOXK1P85037 733 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 CDK18Q07002 472 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 MESDQ14696 234 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 IGFBP7Q16270 282 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 SLC18A3Q16572 532 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 ABRAXAS1Q6UWZ7 409 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 NT5DC3Q86UY8 548 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 RSC1A1Q92681 617 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 AGAP3Q96P47 875 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 OR6C1Q96RD1 312 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 GPR63Q9BZJ6 419 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 SLC25A51Q9H1U9 297 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 RAD18Q9NS91 495 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 CROTQ9UKG9 612 aa12.2□□□□□ -0.46
CPSF3-204ENST00000489403 SYCE3A1L190 88 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 OR52A4PA6NMU1 304 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 APOL1O14791 398 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 AURKAO14965 403 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 PPP1R12AO14974 1030 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 TOX3O15405 576 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 KIF1CO43896 1103 aaKnown RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 VEGFDO43915 354 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 KIAA0754O94854 1291 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 CDK14O94921 469 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 NDUFA10O95299 355 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 FURINP09958 794 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 NR1D1P20393 614 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 RPL10P27635 214 aaKnown RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 HNRNPH3P31942 346 aaKnown RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 DLSTP36957 453 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 NOP2P46087 812 aaKnown RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 CAPZBP47756 277 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 DRG2P55039 364 aaKnown RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 GPR18Q14330 331 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 SLC14A2Q15849 920 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 ASTE1Q2TB18 679 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 LACTB2Q53H82 288 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 C6orf15Q6UXA7 325 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 B4GALNT4Q76KP1 1039 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 PRSS42Q7Z5A4 293 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 C11orf96Q7Z7L8 435 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 VSIG1Q86XK7 387 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 GALNT6Q8NCL4 622 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 SPATA22Q8NHS9 363 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.19□□□□□ -0.46
CPSF3-204ENST00000489403 OLFM3Q96PB7 478 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 VPS35Q96QK1 796 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 IFNKQ9P0W0 207 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 TMPRSS11EQ9UL52 423 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 TP53TG5Q9Y2B4 290 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 KCTD3Q9Y597 815 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 SPO11Q9Y5K1 396 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 KCNMB2Q9Y691 235 aa12.19□□□□□ -0.46
CPSF3-204ENST00000489403 HECTD1Q9ULT8 2610 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 GOLGA6L3A6NEY3 463 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 RASSF9O75901 435 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 TMEM253P0C7T8 217 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 SEPT6Q14141 434 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 IL11RAQ14626 422 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 PDK1Q15118 436 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 ATP13A5Q4VNC0 1218 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 AGAP9Q5VTM2 703 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 WASH2PQ6VEQ5 465 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 FAM92BQ6ZTR7 304 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 RASGRP3Q8IV61 690 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 KLHL6Q8WZ60 621 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 CXorf40BQ96DE9 158 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 STAMBPL1Q96FJ0 436 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 ELMO2Q96JJ3 720 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 GLOD4Q9HC38 313 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 BPIFA1Q9NP55 256 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 SLC40A1Q9NP59 571 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 WASH6PQ9NQA3 447 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 UBP1Q9NZI7 540 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 ANKMY1Q9P2S6 941 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 TRIM10Q9UDY6 481 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 WDR37Q9Y2I8 494 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 PCDHB3Q9Y5E6 796 aa12.18□□□□□ -0.46
CPSF3-204ENST00000489403 A0A0A6YYK5 440 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 GOLGA6L19H0YKK7 550 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 PMPCBO75439 489 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 SPAG6O75602 509 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms