RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 C5orf60A6NFR6 353 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 E7EVH7 732 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 NEMP1O14524 444 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 TPP1O14773 563 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 PLD2O14939 933 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ZNF821O75541 412 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 TCEA3O75764 348 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ANXA9O76027 345 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 CD160O95971 181 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 GAS8O95995 478 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ITGA2BP08514 1039 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 FAM87AP0C7U9 286 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ITGB7P26010 798 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 PTPN3P26045 913 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 SOX18P35713 384 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 COILP38432 576 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 THOP1P52888 689 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 MAXP61244 160 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 PRKD1Q15139 912 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 PPP1R7Q15435 360 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 LRRC73Q5JTD7 316 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ANKRD20A2Q5SQ80 823 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ATXN7L2Q5T6C5 722 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 FAXCQ5TGI0 409 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ANKRD20A1Q5TYW2 823 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ANKRD20A3Q5VUR7 823 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 DRICH1Q6PGQ1 229 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 RAB11FIP2Q7L804 512 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 CREG2Q8IUH2 290 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 PHACTR4Q8IZ21 702 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 OR6K2Q8NGY2 324 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 HCAR2Q8TDS4 363 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 BTN2A2Q8WVV5 523 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 MAML1Q92585 1016 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 GRAMD1AQ96CP6 724 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 EXOC2Q96KP1 924 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 TEKT5Q96M29 485 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ZNF641Q96N77 438 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 KLF6Q99612 283 aaPredicted RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 SEMA3CQ99985 751 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 TMEM121Q9BTD3 319 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ADGRE3Q9BY15 652 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 CLPBQ9H078 707 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 SLC25A51Q9H1U9 297 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 C10orf88Q9H8K7 445 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 GLOD4Q9HC38 313 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 PAK5Q9P286 719 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 RSPH14Q9UHP6 348 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 CDC23Q9UJX2 597 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 ATP8A1Q9Y2Q0 1164 aa8.71□□□□□ -1.02
USP4-213ENST00000488520 TNRC6AQ8NDV7 1962 aaKnown RBP8.71□□□□□ -1.02
USP4-213ENST00000488520 ZNF106Q9H2Y7 1883 aaKnown RBP8.7□□□□□ -1.02
USP4-213ENST00000488520 YY2O15391 372 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 NOBOXO60393 691 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 PHF2O75151 1096 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 UGT2B4P06133 528 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 TSHRP16473 764 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 UGT1A5P35504 534 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 IGFALSP35858 605 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 FDFT1P37268 417 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 KCNJ1P48048 391 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 GEMP55040 296 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CYP4F2P78329 520 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CCL7P80098 99 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 SARNPP82979 210 aaKnown RBP8.7□□□□□ -1.02
USP4-213ENST00000488520 SRSF1Q07955 248 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP4-213ENST00000488520 WHAMMP3Q1A5X7 153 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 PARP6Q2NL67 630 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 P3H1Q32P28 736 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ZNF805Q5CZA5 627 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ARMC12Q5T9G4 340 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ESRP1Q6NXG1 681 aaKnown RBP8.7□□□□□ -1.02
USP4-213ENST00000488520 ERAP2Q6P179 960 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ATG14Q6ZNE5 492 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 MAATS1Q7Z4T9 603 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 VASH2Q86V25 355 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 KLHL7Q8IXQ5 586 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ZNF567Q8N184 647 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 SDR16C5Q8N3Y7 309 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CEP112Q8N8E3 955 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 SLC35B2Q8TB61 432 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CCHCR1Q8TD31 782 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 ATG4AQ8WYN0 398 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 NAT6Q93015 286 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CCDC74AQ96AQ1 378 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 SGF29Q96ES7 293 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 KLHL32Q96NJ5 620 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 LENG8Q96PV6 779 aaPredicted RBP8.7□□□□□ -1.02
USP4-213ENST00000488520 MGME1Q9BQP7 344 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 HERPUD2Q9BSE4 406 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 LRRC61Q9BV99 259 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 CEP41Q9BYV8 373 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 SLC13A1Q9BZW2 595 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 NOD2Q9HC29 1040 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 LHX3Q9UBR4 397 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 PISDQ9UG56 409 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 FAM153AQ9UHL3 310 aa8.7□□□□□ -1.02
USP4-213ENST00000488520 R3HDM2Q9Y2K5 976 aaKnown RBP8.7□□□□□ -1.02
USP4-213ENST00000488520 ICE1Q9Y2F5 2266 aa8.69□□□□□ -1.02
USP4-213ENST00000488520 RELNP78509 3460 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms