RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CREG2Q8IUH2 290 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 WDR36Q8NI36 951 aaKnown RBP6.83□□□□□ -1.32
HDAC3-209ENST00000486618 WDR48Q8TAF3 677 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 SLC35G2Q8TBE7 412 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 IFI44Q8TCB0 444 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 IRGQQ8WZA9 623 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 ANKRD7Q92527 254 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 HSPBAP1Q96EW2 488 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 RPL10LQ96L21 214 aaKnown RBP6.83□□□□□ -1.32
HDAC3-209ENST00000486618 CLUHP3Q96NS8 147 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 SERPINB11Q96P15 392 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.83□□□□□ -1.32
HDAC3-209ENST00000486618 CALN1Q9BXU9 219 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 TRIM4Q9C037 500 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 GHITMQ9H3K2 345 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 MMRN2Q9H8L6 949 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 FAM204AQ9H8W3 233 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 TMEM8AQ9HCN3 771 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 PREBQ9HCU5 417 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 UCKL1Q9NWZ5 548 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 SUCOQ9UBS9 1254 aaKnown RBP6.83□□□□□ -1.32
HDAC3-209ENST00000486618 TSPAN16Q9UKR8 245 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 KIAA1257Q9ULG3 409 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 U3KQE9 123 aa6.83□□□□□ -1.32
HDAC3-209ENST00000486618 USP9XQ93008 2570 aaPredicted RBP6.83□□□□□ -1.32
HDAC3-209ENST00000486618 LRRK2Q5S007 2527 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 NOTCH2Q04721 2471 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CPED1A4D0V7 1026 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 PGPEP1LA6NFU8 196 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CDRT15L2A8MXV6 281 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 K7ESM1 405 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ALOX15BO15296 676 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SLC31A1O15431 190 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SPOPO43791 374 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 STX10O60499 249 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TNFSF15O95150 251 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 AFPP02771 609 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TRIM49P0CI25 452 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TRIM49CP0CI26 452 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 GIMD1P0DJR0 217 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 LCP1P13796 627 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CD19P15391 556 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ZNF3P17036 446 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 HNRNPA2B1P22626 353 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 NR2F2P24468 414 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TPP2P29144 1249 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CSTF2P33240 577 aaKnown RBP eCLIP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 NTF4P34130 210 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 PSMC2P35998 433 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 BASP1P80723 227 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 GALNT1Q10472 559 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CNTN1Q12860 1018 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ZNF177Q13360 481 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CUL4AQ13619 759 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ALG11Q2TAA5 492 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ACCSLQ4AC99 568 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 DCAF6Q58WW2 860 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 FSCBQ5H9T9 825 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 NADSYN1Q6IA69 706 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 DRICH1Q6PGQ1 229 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SHC4Q6S5L8 630 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 RFX8Q6ZV50 586 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CLEC14AQ86T13 490 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TMTC1Q8IUR5 882 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 APCDD1Q8J025 514 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CFAP52Q8N1V2 620 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 PLD6Q8N2A8 252 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 PRR18Q8N4B5 295 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 EXD3Q8N9H8 876 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ZBTB8BQ8NAP8 495 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TMEM145Q8NBT3 493 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 KIAA0895Q8NCT3 520 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 AGBL5Q8NDL9 886 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 FBXL13Q8NEE6 735 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 RFWD2Q8NHY2 731 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 UBA3Q8TBC4 463 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 HSPH1Q92598 858 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TUBGCP3Q96CW5 907 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ATXN7L3BQ96GX2 97 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 PRICKLE1Q96MT3 831 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CATSPER2Q96P56 530 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TMEM237Q96Q45 408 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SEMA3CQ99985 751 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CCDC106Q9BWC9 280 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 BRD8Q9H0E9 1235 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 IFT22Q9H7X7 185 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CRLF2Q9HC73 371 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SSU72Q9NP77 194 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 STARD5Q9NSY2 213 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 HAUS2Q9NVX0 235 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 DNAJC28Q9NX36 388 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 ADPRHL2Q9NX46 363 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 RAB20Q9NX57 234 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 UBP1Q9NZI7 540 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 HOOK1Q9UJC3 728 aaKnown RBP6.82□□□□□ -1.32
HDAC3-209ENST00000486618 SLC25A13Q9UJS0 675 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 VPS28Q9UK41 221 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 TLR6Q9Y2C9 796 aa6.82□□□□□ -1.32
HDAC3-209ENST00000486618 CA5BQ9Y2D0 317 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms