RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 UCKL1Q9NWZ5 548 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TRNAU1APQ9NX07 287 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 VPS18Q9P253 973 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 RNF14Q9UBS8 474 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 FAM8A1Q9UBU6 413 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PYCARDQ9ULZ3 195 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PADI4Q9UM07 663 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ZNF232Q9UNY5 417 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 DNAJC16Q9Y2G8 782 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 MAD1L1Q9Y6D9 718 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 GOLGA4Q13439 2230 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 FRYLO94915 3013 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 PABPN1LA6NDY0 278 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 PCNX2A6NKB5 2137 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 KIF2AO00139 706 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 QSOX1O00391 747 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 IFRD1O00458 451 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 YY2O15391 372 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 SRP72O76094 671 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 METTL18O95568 372 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 AVPP01185 164 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 PRLP01236 227 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 VIPP01282 170 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 ADRB1P08588 477 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 ATXN1LP0C7T5 689 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 ETS1P14921 441 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 IDSP22304 550 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 ALDH4A1P30038 563 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 MC4RP32245 332 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 COILP38432 576 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 MAPK9P45984 424 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 EIF1AXP47813 144 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 POLD2P49005 469 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 FNTAP49354 379 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 CALCOCO2Q13137 446 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 PLCL1Q15111 1095 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 SEPT7Q16181 437 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 SYTL3Q4VX76 610 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 HENMT1Q5T8I9 393 aaKnown RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 LYPLAL1Q5VWZ2 237 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 FOXR1Q6PIV2 292 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 AFTPHQ6ULP2 937 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 DHRS13Q6UX07 377 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 KDM7AQ6ZMT4 941 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 DET1Q7L5Y6 550 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 SDCCAG8Q86SQ7 713 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 PIP4P1Q86T03 277 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 SLC9B2Q86UD5 537 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 NLRP8Q86W28 1048 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 BEND7Q8N7W2 519 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 Q8N9G6 341 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 GPR26Q8NDV2 337 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 SH3KBP1Q96B97 665 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 C16orf45Q96MC5 204 aaPredicted RBP7.95□□□□□ -1.14
USP40-216ENST00000485943 DEPDC7Q96QD5 511 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 TRIB3Q96RU7 358 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 COPS8Q99627 209 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 HERPUD2Q9BSE4 406 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 LGR4Q9BXB1 951 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 STRADBQ9C0K7 418 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 KLC4Q9NSK0 619 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 KCNK6Q9Y257 313 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 PCDHGA1Q9Y5H4 931 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 AK5Q9Y6K8 562 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 DGKBQ9Y6T7 804 aa7.95□□□□□ -1.14
USP40-216ENST00000485943 OR2AG2A6NM03 316 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 OR5K4A6NMS3 321 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 USP27XA6NNY8 438 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CCDC188H7C350 402 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 AURKAO14965 403 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 HYAL3O43820 417 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 KDM1AO60341 852 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 MTX2O75431 263 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 URI1O94763 535 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 SLC35G4P0C7Q5 338 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 ZSCAN5DPP0CG00 497 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CKMT1AP12532 417 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 AMD1P17707 334 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 ADRA1DP25100 572 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 AK4P27144 223 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 RPL22P35268 128 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 NPY2RP49146 381 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CDK16Q00536 496 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CTBSQ01459 385 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 DR1Q01658 176 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CACNG1Q06432 222 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 TMEM115Q12893 351 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 SEMA5AQ13591 1074 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 THOC5Q13769 683 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 OASLQ15646 514 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 CHRNA6Q15825 494 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 AMZ1Q400G9 498 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 GPR33Q49SQ1 333 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 ATP13A5Q4VNC0 1218 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 C14orf28Q4W4Y0 310 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CCDC38Q502W7 563 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 DNAJC21Q5F1R6 531 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 PCID2Q5JVF3 399 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 FNBP1LQ5T0N5 605 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 ARMC6Q6NXE6 501 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms