RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GABRB3P28472 473 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 FMO4P31512 558 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 HOXD12P35452 270 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 NSG1P42857 185 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 CD151P48509 253 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 EIF3BP55884 814 aaKnown RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 DUOXA1Q1HG43 343 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 CNSTQ6PJW8 725 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 TMEM220Q6QAJ8 160 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 PACS1Q6VY07 963 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 MACC1Q6ZN28 852 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 DET1Q7L5Y6 550 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 GALNT7Q86SF2 657 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 SLC22A18ASQ8N1D0 253 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 CLDN19Q8N6F1 224 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 RASGEF1AQ8N9B8 481 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 OR56A4Q8NGH8 313 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 NAT14Q8WUY8 206 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 LPGAT1Q92604 370 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 SGF29Q96ES7 293 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 KCNH6Q9H252 994 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 GPR27Q9NS67 375 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 KLQ9UEF7 1012 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 SMG5Q9UPR3 1016 aaKnown RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 SLC17A4Q9Y2C5 497 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 IKBKGQ9Y6K9 419 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 PRSS21Q9Y6M0 314 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 LRP4O75096 1905 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 ARHGEF17Q96PE2 2063 aaPredicted RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 GPR179Q6PRD1 2367 aa12.08□□□□□ -0.47
SDC1-206ENST00000482879 SPTY2D1-AS1A0A0U1RR47 76 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 A0A1B0GVT2 93 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 OR2AG2A6NM03 316 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 TNFRSF10CO14798 259 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 NUAK1O60285 661 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 DNAJC6O75061 913 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 FAM155BO75949 473 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 AP2A2O94973 939 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 EPN2O95208 641 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 INHBAP08476 426 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 RPS3P23396 243 aaKnown RBP eCLIP12.08□□□□□ -0.481e-10■■■□□ 17.7
SDC1-206ENST00000482879 GP5P40197 560 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 MSH2P43246 934 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 ABCG1P45844 678 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 CTSCP53634 463 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 CSE1LP55060 971 aaKnown RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 NXPH1P58417 271 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 SRP54P61011 504 aaKnown RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 FZD2Q14332 565 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 GRTP1Q5TC63 336 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 PEAR1Q5VY43 1037 aaPredicted RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 PTRHD1Q6GMV3 140 aaKnown RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 LAIR1Q6GTX8 287 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 FBXO38Q6PIJ6 1188 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 RABEPKQ7Z6M1 372 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 SPATS2Q86XZ4 545 aaKnown RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 CEP76Q8TAP6 659 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 SLC44A1Q8WWI5 657 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 OR1E3Q8WZA6 343 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 TSACCQ96A04 125 aaPredicted RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 PAFAH2Q99487 392 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 CCDC68Q9H2F9 335 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 ARRDC1-AS1Q9H2J1 176 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 RMI1Q9H9A7 625 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 CYP4F12Q9HCS2 524 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 FGF22Q9HCT0 170 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 MRPL40Q9NQ50 206 aaKnown RBP12.08□□□□□ -0.48
SDC1-206ENST00000482879 ZNHIT2Q9UHR6 403 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 GNPTGQ9UJJ9 305 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 SUFUQ9UMX1 484 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 PLAAQ9Y263 795 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 ANKRD6Q9Y2G4 727 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 PCDHB1Q9Y5F3 818 aa12.08□□□□□ -0.48
SDC1-206ENST00000482879 PRSS38A1L453 326 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 GPR89AB7ZAQ6 455 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 F8W8V4 182 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 QSOX1O00391 747 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 CHUKO15111 745 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 GRID2O43424 1007 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 TNFP01375 233 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ESR1P03372 595 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 FUCA1P04066 466 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 CFIP05156 583 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 IVLP07476 585 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 NUDT17P0C025 328 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 OR56A5P0C7T3 313 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 GPR89BP0CG08 455 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 PKMP14618 531 aaKnown RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 SPRP35270 261 aaPredicted RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 GNPDA1P46926 289 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ADARP55265 1226 aaKnown RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 PPARDQ03181 441 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 IFFO1Q0D2I5 559 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 EIF2B5Q13144 721 aaKnown RBP12.07□□□□□ -0.48
SDC1-206ENST00000482879 ALG11Q2TAA5 492 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 KIF19Q2TAC6 998 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ZNF542PQ5EBM4 170 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 KCTD16Q68DU8 428 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 ZNF549Q6P9A3 640 aa12.07□□□□□ -0.48
SDC1-206ENST00000482879 CRTC3Q6UUV7 619 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms