RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 PRAMEF10O60809 474 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 ZNF7P17097 686 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 CDC25BP30305 580 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 DMPKQ09013 629 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 TMEM115Q12893 351 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 C16orf72Q14CZ0 275 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 PTPRRQ15256 657 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 TAF1AQ15573 450 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 RFLNAQ6ZTI6 216 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 NYAP1Q6ZVC0 841 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 PEX26Q7Z412 305 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 ADGRG6Q86SQ4 1221 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 TRAPPC5Q8IUR0 188 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 DDHD1Q8NEL9 900 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 IPMKQ8NFU5 416 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 BLOC1S5Q8TDH9 187 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 USP7Q93009 1102 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 KIAA1143Q96AT1 154 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 ULK4Q96C45 1275 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 FRMD8P1Q9BZ68 369 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 CPNE5Q9HCH3 593 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 SAE1Q9UBE0 346 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 AMFRQ9UKV5 643 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 KCNK6Q9Y257 313 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 ST14Q9Y5Y6 855 aa11.29□□□□□ -0.6
CCM2-213ENST00000480658 OAS3Q9Y6K5 1087 aaKnown RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 MN1Q10571 1320 aaPredicted RBP11.29□□□□□ -0.6
CCM2-213ENST00000480658 ZFYVE26Q68DK2 2539 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 SOWAHDA6NJG2 315 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 GSTM1P09488 218 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 PIRTP0C851 137 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 RBP3P10745 1247 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 HGFP14210 728 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 ITIH1P19827 911 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 MSH3P20585 1137 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 LPOP22079 712 aaPredicted RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 CD68P34810 354 aaPredicted RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 EIF3EP60228 445 aaKnown RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 OTUD4Q01804 1114 aaKnown RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 GSTM4Q03013 218 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 CFHR1Q03591 330 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 NFATC2Q13469 925 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 LAMB3Q13751 1172 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 ZNF449Q6P9G9 518 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 DARS2Q6PI48 645 aaKnown RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 KDELC1Q6UW63 502 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 ABRAXAS1Q6UWZ7 409 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 USP53Q70EK8 1073 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 AMZ2Q86W34 360 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 FAM129CQ86XR2 697 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 DTX1Q86Y01 620 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 CARFQ8N187 725 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 RNF10Q8N5U6 811 aaKnown RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 ACTL9Q8TC94 416 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 LRRN4Q8WUT4 740 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 PTCD2Q8WV60 388 aaKnown RBP11.28□□□□□ -0.6
CCM2-213ENST00000480658 ZFPM2Q8WW38 1151 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 PATE1Q8WXA2 126 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 EID2BQ96D98 161 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 CXorf40BQ96DE9 158 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 ZDHHC12Q96GR4 267 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 MRGPRX2Q96LB1 330 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 SPATA13Q96N96 652 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 CATSPER2Q96P56 530 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 FBXO8Q9NRD0 319 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 SLC39A1Q9NY26 324 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 UBP1Q9NZI7 540 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 IL17CQ9P0M4 197 aa11.28□□□□□ -0.6
CCM2-213ENST00000480658 CACNA1GO43497 2377 aa11.27□□□□□ -0.6
CCM2-213ENST00000480658 IGSF10Q6WRI0 2623 aa11.27□□□□□ -0.6
CCM2-213ENST00000480658 A0A0U1RQS6 177 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ERI2A8K979 691 aaKnown RBP11.27□□□□□ -0.61
CCM2-213ENST00000480658 C9orf172C9J069 976 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 F8W8V4 182 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 QSOX1O00391 747 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 KCNN4O15554 427 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 PSMD3O43242 534 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 NRDCO43847 1150 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 UBXN7O94888 489 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 PRAMEF1O95521 474 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 GAS8O95995 478 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 AMD1P17707 334 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 MAP4P27816 1152 aaKnown RBP11.27□□□□□ -0.61
CCM2-213ENST00000480658 NDUFS1P28331 727 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 AKT1P31749 480 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 CSF2RBP32927 897 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 CAPZBP47756 277 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 GSDMDP57764 484 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 UBE2IP63279 158 aaKnown RBP11.27□□□□□ -0.61
CCM2-213ENST00000480658 COL9A2Q14055 689 aaPredicted RBP11.27□□□□□ -0.61
CCM2-213ENST00000480658 MAP7Q14244 749 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ATP13A5Q4VNC0 1218 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ANKRD20A2Q5SQ80 823 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ANKRD20A1Q5TYW2 823 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ANKRD20A3Q5VUR7 823 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 CRTC3Q6UUV7 619 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ZNF574Q6ZN55 896 aaPredicted RBP11.27□□□□□ -0.61
CCM2-213ENST00000480658 ARHGEF18Q6ZSZ5 1173 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 TMEM26Q6ZUK4 368 aa11.27□□□□□ -0.61
CCM2-213ENST00000480658 ARHGAP22Q7Z5H3 698 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms