RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MBTD1Q05BQ5 628 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 PRAMEF19Q5SWL8 479 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 MOB2Q70IA6 237 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 OR6K2Q8NGY2 324 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 OR4L1Q8NH43 312 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 NIFKQ9BYG3 293 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 TM6SF2Q9BZW4 377 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 SLC27A5Q9Y2P5 690 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ELOVL7A1L3X0 281 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 TRIM64CA6NLI5 447 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 G3V2L1 256 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 TMX2-CTNND1H3BSU7 103 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 VPS4BO75351 444 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SLC35E2BP0CK96 405 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 MAP2K4P45985 399 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 BRCC3P46736 316 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 OXCT1P55809 520 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 RAB25P57735 213 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 TRIM69Q86WT6 500 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 CNIH3Q8TBE1 160 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SH3KBP1Q96B97 665 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ITCHQ96J02 903 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 PANX1Q96RD7 426 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ARL15Q9NXU5 204 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 F5H5T6 163 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 RGS14O43566 566 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SEMA3DO95025 777 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 EDN1P05305 212 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 DNAJB2P25686 324 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 OPRL1P41146 370 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 HERC3Q15034 1050 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 PSMD5Q16401 504 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 TREML2Q5T2D2 321 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 C16orf59Q7L2K0 433 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ADCK2Q7Z695 626 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 TBCCD1Q9NVR7 557 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 LRFN2Q9ULH4 789 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 RRN3P2A6NIE6 340 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 NOTOA8MTQ0 251 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 PRR23D1E9PI22 279 aaPredicted RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 RFXANKO14593 260 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SNX4O95219 450 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 OR4Q2P0C623 313 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SMIM18P0DKX4 95 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 PRR23D2P0DMB1 279 aaPredicted RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 CRATP43155 626 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 HSPA7P48741 367 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ARPC4P59998 168 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 LCP2Q13094 533 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ZNF549Q6P9A3 640 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 PAQR3Q6TCH7 311 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 DCDC5Q6ZRR9 648 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 SYT12Q8IV01 421 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 HS3ST5Q8IZT8 346 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 OR13C4Q8NGS5 318 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 RBM4BQ9BQ04 359 aaKnown RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 RBM4Q9BWF3 364 aaKnown RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 ADGRE3Q9BY15 652 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 POLR1EQ9GZS1 481 aaKnown RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 MALT1Q9UDY8 824 aa13.4□□□□□ -0.26
USP42-206ENST00000479544 ZNF214Q9UL59 606 aaPredicted RBP13.4□□□□□ -0.26
USP42-206ENST00000479544 EGFRP00533 1210 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 TKTP29401 623 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 NR4A2P43354 598 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CDC42EP1Q00587 391 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 FPGSQ05932 587 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ILF2Q12905 390 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 ACAP2Q15057 778 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 RFX4Q33E94 735 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PROSER1Q86XN7 944 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 LGI2Q8N0V4 545 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 SLC35F5Q8WV83 523 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 STON2Q8WXE9 905 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 TRIM63Q969Q1 353 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CAPNS2Q96L46 248 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 VPS35Q96QK1 796 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 DCSTAMPQ9H295 470 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ATP13A1Q9HD20 1204 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ACTR3BQ9P1U1 418 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 EVLQ9UI08 416 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 TMCC3Q9ULS5 477 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 LAMB4A4D0S4 1761 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 CTPS1P17812 591 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 OXTRP30559 389 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CHI3L1P36222 383 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 ARSFP54793 590 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CDK18Q07002 472 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 KCNAB2Q13303 367 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ZNF177Q13360 481 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 ZSWIM7Q19AV6 140 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PPP4R4Q6NUP7 873 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 UGT3A1Q6NUS8 523 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 MED8Q96G25 268 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 AURKBQ96GD4 344 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 GDAP2Q9NXN4 497 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 DKK3Q9UBP4 350 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ARIH1Q9Y4X5 557 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 CCDC182A6NF36 153 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ARVCFO00192 962 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms