RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 CCDC70Q6NSX1 233 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 DRICH1Q6PGQ1 229 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 BRAT1Q6PJG6 821 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SLC30A9Q6PML9 568 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 GDPD4Q6W3E5 623 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SLC36A4Q6YBV0 504 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 ARHGEF18Q6ZSZ5 1173 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 USP30Q70CQ3 517 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 MAMDC2Q7Z304 686 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 FGD2Q7Z6J4 655 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 THAP5Q7Z6K1 395 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 WDR5BQ86VZ2 330 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 LONP2Q86WA8 852 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 RASSF3Q86WH2 238 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 CACUL1Q86Y37 369 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 HDDC3Q8N4P3 179 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 ATL2Q8NHH9 583 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 FAM81AQ8TBF8 368 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 NETO1Q8TDF5 533 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 HCAR2Q8TDS4 363 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 PDCD6IPQ8WUM4 868 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 C1orf54Q8WWF1 131 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 NKD2Q969F2 451 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 MAGOHBQ96A72 148 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 RAB7BQ96AH8 199 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 ERLEC1Q96DZ1 483 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 MS4A14Q96JA4 679 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 MRGPRX1Q96LB2 322 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 IL12RB2Q99665 862 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SH3GL2Q99962 352 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SEMA3CQ99985 751 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 FAM118BQ9BPY3 351 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SLX1AQ9BQ83 275 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 LRFN3Q9BTN0 628 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 CARD6Q9BX69 1037 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 CPEB1Q9BZB8 566 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 KCNH6Q9H252 994 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 PABPC3Q9H361 631 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 SEMA3GQ9NS98 782 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 INTS7Q9NVH2 962 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 IRAK4Q9NWZ3 460 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 LHX3Q9UBR4 397 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 CTNNAL1Q9UBT7 734 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 EVLQ9UI08 416 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 DUSP13Q9UII6 198 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 CDC23Q9UJX2 597 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 BLOC1S6Q9UL45 172 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 DNPEPQ9ULA0 475 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 DRG1Q9Y295 367 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 ATP8A1Q9Y2Q0 1164 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 AAR2Q9Y312 384 aaKnown RBP6.2□□□□□ -1.42
SF3B1-209ENST00000479532 ACTL7AQ9Y615 435 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 NCOR1O75376 2440 aa6.2□□□□□ -1.42
SF3B1-209ENST00000479532 TCRBV7S2A1N4TA0A589 114 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ANTXRLA6NF34 631 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 C5orf60A6NFR6 353 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 LRRC72A6NJI9 287 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 E7EVH7 732 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 NPIPB6E9PJ23 425 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 K7ESF4 209 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 NEMP1O14524 444 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 NDC80O14777 642 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ZNF185O15231 689 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 MID1O15344 667 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 PSMD3O43242 534 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 MGRN1O60291 552 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 PSPNO60542 156 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 PHF2O75151 1096 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 RNASEH2AO75792 299 aaKnown RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 SEC31AO94979 1220 aaKnown RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 PIGNO95427 931 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 GAS8O95995 478 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 PEX11BO96011 259 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 IFNB1P01574 187 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 HLA-DQB2P05538 268 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 UGT2B4P06133 528 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 VIMP08670 466 aaKnown RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 GSTM1P09488 218 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 SP9P0CG40 484 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 CYP2A6P11509 494 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 FDFT1P37268 417 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 CD96P40200 585 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 NEK3P51956 506 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 CCNG1P51959 295 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 GEMP55040 296 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 DSC2Q02487 901 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ELP6Q0PNE2 266 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ZBTB17Q13105 803 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 SLC14A2Q15849 920 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ANKRD20A2Q5SQ80 823 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ARMC12Q5T9G4 340 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ANKRD20A1Q5TYW2 823 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ANKRD20A3Q5VUR7 823 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 TTC19Q6DKK2 380 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ERAP2Q6P179 960 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 NCEH1Q6PIU2 408 aa6.19□□□□□ -1.42
SF3B1-209ENST00000479532 CCDC137Q6PK04 289 aaKnown RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 ERN2Q76MJ5 926 aaKnown RBP6.19□□□□□ -1.42
SF3B1-209ENST00000479532 CEP68Q76N32 757 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms