RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 BOLA3Q53S33 107 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 ANKRD20A8PQ5CZ79 823 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 CRTC3Q6UUV7 619 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 HPS6Q86YV9 775 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 LRRC49Q8IUZ0 686 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 RHOT1Q8IXI2 618 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 RBM12BQ8IXT5 1001 aaKnown RBP16.88■□□□□ 0.29
VIM-204ENST00000478746 LPCAT1Q8NF37 534 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 HSPH1Q92598 858 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 CSPG4P5Q96PW8 444 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 LYSMD1Q96S90 227 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 RAB33BQ9H082 229 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 POT1Q9NUX5 634 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 DNAJC16Q9Y2G8 782 aa16.88■□□□□ 0.29
VIM-204ENST00000478746 IGHV5-51A0A0C4DH38 117 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 GPR89AB7ZAQ6 455 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 KMOO15229 486 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 CEACAM4O75871 244 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 GPR89BP0CG08 455 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 FERP16591 822 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 ZNF7P17097 686 aaPredicted RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 CA4P22748 312 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 ELAVL4P26378 380 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 PTGIRP43119 386 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 RPL26P61254 145 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 ACY1Q03154 408 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 GPR18Q14330 331 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 KCNAB1Q14722 419 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 NR6A1Q15406 480 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 SMTNL2Q2TAL5 461 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 PLA2G4EQ3MJ16 856 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 C1QL3Q5VWW1 255 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 SLC6A19Q695T7 634 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 ABRAXAS1Q6UWZ7 409 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 ADGRG6Q86SQ4 1221 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 RBMXL3Q8N7X1 1067 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 FDCSPQ8NFU4 85 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 ENOX1Q8TC92 643 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 UBXN4Q92575 508 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 MR1Q95460 341 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 PNPLA2Q96AD5 504 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 CXorf40BQ96DE9 158 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 C19orf60Q96EN9 201 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 SLC41A2Q96JW4 573 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 C5orf34Q96MH7 638 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 PHF12Q96QT6 1004 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 TDRD1Q9BXT4 1180 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 CLSTN2Q9H4D0 955 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 PCDH9Q9HC56 1237 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 SEMA5BQ9P283 1151 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 RPL26L1Q9UNX3 145 aaKnown RBP16.87■□□□□ 0.29
VIM-204ENST00000478746 SLC5A6Q9Y289 635 aa16.87■□□□□ 0.29
VIM-204ENST00000478746 A6NL46 340 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 OR52A4PA6NMU1 304 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 CHUKO15111 745 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 ZNF185O15231 689 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 KRT86O43790 486 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 BRAFP15056 766 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 RPL10P27635 214 aaKnown RBP16.86■□□□□ 0.29
VIM-204ENST00000478746 IL1R2P27930 398 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 PCK1P35558 622 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 ARL4DP49703 201 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 LAMB3Q13751 1172 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 CDKAL1Q5VV42 579 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 TTC13Q8NBP0 860 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 MLPHQ9BV36 600 aaPredicted RBP16.86■□□□□ 0.29
VIM-204ENST00000478746 SPATA16Q9BXB7 569 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 WASH6PQ9NQA3 447 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 FGF21Q9NSA1 209 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.86■□□□□ 0.29
VIM-204ENST00000478746 RBM22Q9NW64 420 aaKnown RBP eCLIP16.86■□□□□ 0.29
VIM-204ENST00000478746 TTLL3Q9Y4R7 772 aa16.86■□□□□ 0.29
VIM-204ENST00000478746 SSU72P8A0A1W2PR75 194 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 TMEM63AO94886 807 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 CBX6O95503 412 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 POU3F2P20265 443 aaPredicted RBP16.85■□□□□ 0.29
VIM-204ENST00000478746 IDSP22304 550 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 ZNF165P49910 485 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 ZNF569Q5MCW4 686 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 ALG1LQ6GMV1 187 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 WASH2PQ6VEQ5 465 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 IRF2BP2Q7Z5L9 587 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 LRRTM4Q86VH4 590 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 SNRNP40Q96DI7 357 aaKnown RBP16.85■□□□□ 0.29
VIM-204ENST00000478746 ZNF514Q96K75 400 aaPredicted RBP16.85■□□□□ 0.29
VIM-204ENST00000478746 TIMM29Q9BSF4 260 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 NUDT9Q9BW91 350 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 HAUS2Q9NVX0 235 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 DTLQ9NZJ0 730 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 TRIM10Q9UDY6 481 aa16.85■□□□□ 0.29
VIM-204ENST00000478746 ANKRD66B4E2M5 251 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 MATN3O15232 486 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 CPNE3O75131 537 aaKnown RBP16.84■□□□□ 0.29
VIM-204ENST00000478746 JCHAINP01591 159 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 FTLP02792 175 aaPredicted RBP16.84■□□□□ 0.29
VIM-204ENST00000478746 KLK3P07288 261 aaPredicted RBP16.84■□□□□ 0.29
VIM-204ENST00000478746 EBLN1P0CF75 366 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 RARAP10276 462 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 IL4RP24394 825 aa16.84■□□□□ 0.29
VIM-204ENST00000478746 DRG2P55039 364 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms