RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HCAR2Q8TDS4 363 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 BBS4Q96RK4 519 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ITPAQ9BY32 194 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 NUF2Q9BZD4 464 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 UPF2Q9HAU5 1272 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 BPIFA1Q9NP55 256 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 INTS6Q9UL03 887 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 PADI3Q9ULW8 664 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 PYGO1Q9Y3Y4 419 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 LAS1LQ9Y4W2 734 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 DISP3Q9P2K9 1392 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 FSD2A1L4K1 749 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 ANKRD18BA2A2Z9 1011 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 C5orf60A6NFR6 353 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SNAP23O00161 211 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TCERG1O14776 1098 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 BCAT2O15382 392 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 CIDEAO60543 219 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 CTSVO60911 334 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SEC14L2O76054 403 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 ZFAND5O76080 213 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 GFPT2O94808 682 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SCGB1D1O95968 90 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 LDHCP07864 332 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 LAMP2P13473 410 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 BSGP35613 385 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 ARL3P36405 182 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 GNAQP50148 359 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 ARF3P61204 181 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 ARF1P84077 181 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 PDE1BQ01064 536 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 MAMLD1Q13495 774 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 RNPS1Q15287 305 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 GSTA3Q16772 222 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 HIST2H2ACQ16777 129 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TCTEX1D4Q5JR98 221 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 FAM205BPQ63HN1 556 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TXNDC8Q6A555 127 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 CDC73Q6P1J9 531 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 RBMS3Q6XE24 437 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 DHX40Q8IX18 779 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 OR5R1Q8NH85 324 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 USP6NLQ92738 828 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 INTS12Q96CB8 462 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 MOCOSQ96EN8 888 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 MTERF1Q99551 399 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SH3GL2Q99962 352 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TREX2Q9BQ50 279 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 H2AFJQ9BTM1 129 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 CABLES2Q9BTV7 478 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TMX4Q9H1E5 349 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SCPEP1Q9HB40 452 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 FGF22Q9HCT0 170 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 DIAPH3Q9NSV4 1193 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 PRR34Q9NV39 138 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SEPT11Q9NVA2 429 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SWAP70Q9UH65 585 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 FBXO2Q9UK22 296 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 MKLN1Q9UL63 735 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TTC7AQ9ULT0 858 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 A4GNTQ9UNA3 340 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 FAM96BQ9Y3D0 163 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 C2CD2Q9Y426 696 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 KCNE2Q9Y6J6 123 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 SCINQ9Y6U3 715 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 CAPN7Q9Y6W3 813 aa2.98□□□□□ -1.93
CCDC88A-212ENST00000474059 TMEM202A6NGA9 273 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 LRRC53A6NM62 1247 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 H7C423 109 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TAF4O00268 1085 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 SYNGR3O43761 229 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 CCNDBP1O95273 360 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TSHBP01222 138 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TFP02787 698 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 ACADMP11310 421 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 DPEP1P16444 411 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 NFKBIAP25963 317 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PBX3P40426 434 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 RARSP54136 660 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 NAP1L1P55209 391 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PPP2R5BQ15173 497 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 MED22Q15528 200 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 CCNG2Q16589 344 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TCTE1Q5JU00 501 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TTI2Q6NXR4 508 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 METTL2BQ6P1Q9 378 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 FASTKD5Q7L8L6 764 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 LINGO2Q7L985 606 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 P2RY8Q86VZ1 359 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 TDRPQ86YL5 185 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PDILTQ8N807 584 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PSPC1Q8WXF1 523 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PIGTQ969N2 578 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 STAMBPL1Q96FJ0 436 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 METTL2AQ96IZ6 378 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 RBM4BQ9BQ04 359 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 SDF4Q9BRK5 362 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 GHITMQ9H3K2 345 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 MUC13Q9H3R2 512 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 PLEKHA4Q9H4M7 779 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms