RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 VSIG1Q86XK7 387 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 TADA1Q96BN2 335 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 TGM7Q96PF1 710 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 CHP1Q99653 195 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 GLOD4Q9HC38 313 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 BPIFA1Q9NP55 256 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 SIDT1Q9NXL6 827 aaKnown RBP20.75■□□□□ 0.91
COL9A3-207ENST00000467819 UBP1Q9NZI7 540 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 ZNF624Q9P2J8 865 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-207ENST00000467819 HYOU1Q9Y4L1 999 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 SPO11Q9Y5K1 396 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 SLC30A1Q9Y6M5 507 aa20.75■□□□□ 0.91
COL9A3-207ENST00000467819 MAST4O15021 2626 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 A0A0A6YYK5 440 aaPredicted RBP20.74■□□□□ 0.91
COL9A3-207ENST00000467819 AURKAO14965 403 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 ARHGAP6O43182 974 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 UBXN7O94888 489 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 NDST3O95803 873 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 AMD1P17707 334 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 XRCC1P18887 633 aaPredicted RBP20.74■□□□□ 0.91
COL9A3-207ENST00000467819 RPL10P27635 214 aaKnown RBP20.74■□□□□ 0.91
COL9A3-207ENST00000467819 ARHGAP25P42331 645 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 SEPHS1P49903 392 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 ABHD18Q0P651 414 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 CDC20Q12834 499 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 TRIM14Q14142 442 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 RHOT2Q8IXI1 618 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 C9orf72Q96LT7 481 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 TIMM29Q9BSF4 260 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 EFHD1Q9BUP0 239 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 UCK1Q9HA47 277 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 TRIM10Q9UDY6 481 aa20.74■□□□□ 0.91
COL9A3-207ENST00000467819 NBASA2RRP1 2371 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 VEGFDO43915 354 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 CDK14O94921 469 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 DLGAP3O95886 979 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 C9P02748 559 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 ANKRD34CP0C6C1 535 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 PTPN3P26045 913 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 DRG2P55039 364 aaKnown RBP20.73■□□□□ 0.91
COL9A3-207ENST00000467819 TLE1Q04724 770 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 NOMO1Q15155 1222 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 SLC14A2Q15849 920 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 TEX44Q53QW1 395 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 MFSD7Q6UXD7 560 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 ZNF547Q8IVP9 402 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 STARD8Q92502 1023 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 TRIT1Q9H3H1 467 aaKnown RBP20.73■□□□□ 0.91
COL9A3-207ENST00000467819 ABHD10Q9NUJ1 306 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 SAE1Q9UBE0 346 aaPredicted RBP20.73■□□□□ 0.91
COL9A3-207ENST00000467819 TMPRSS11EQ9UL52 423 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 FLNCQ14315 2725 aa20.73■□□□□ 0.91
COL9A3-207ENST00000467819 OR52A4PA6NMU1 304 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 CBFA2T2O43439 604 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 RASSF9O75901 435 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 BRAFP15056 766 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 OAS2P29728 719 aaKnown RBP20.72■□□□□ 0.91
COL9A3-207ENST00000467819 LEPRP48357 1165 aaKnown RBP20.72■□□□□ 0.91
COL9A3-207ENST00000467819 LLGL1Q15334 1064 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 ATP13A5Q4VNC0 1218 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 ATP1A1-AS1Q5TC04 95 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 LRRC38Q5VT99 294 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 C16orf46Q6P387 395 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 TRAPPC5Q8IUR0 188 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 RHOT1Q8IXI2 618 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 GDAP1Q8TB36 358 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 RSC1A1Q92681 617 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 CCDC42Q96M95 316 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 ULBP3Q9BZM4 244 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 NHEJ1Q9H9Q4 299 aaPredicted RBP20.72■□□□□ 0.91
COL9A3-207ENST00000467819 POT1Q9NUX5 634 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 DDX56Q9NY93 547 aaKnown RBP20.72■□□□□ 0.91
COL9A3-207ENST00000467819 TUBD1Q9UJT1 453 aa20.72■□□□□ 0.91
COL9A3-207ENST00000467819 MRPS18BQ9Y676 258 aaKnown RBP20.72■□□□□ 0.91
COL9A3-207ENST00000467819 NAV2Q8IVL1 2488 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 F5H423 210 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-207ENST00000467819 TPM1P09493 284 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 IDSP22304 550 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 STAT5AP42229 794 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 SH3BP2P78314 561 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 GTF2H3Q13889 308 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 PRKD1Q15139 912 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-207ENST00000467819 SKIDA1Q1XH10 827 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 DEFB109BQ30KR1 87 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 KAZNQ674X7 775 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 ESX1Q8N693 406 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 COL26A1Q96A83 441 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 CXorf40BQ96DE9 158 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 TEKT5Q96M29 485 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 VPS35Q96QK1 796 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 OR6C1Q96RD1 312 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 SRPK1Q96SB4 655 aaKnown RBP20.71■□□□□ 0.91
COL9A3-207ENST00000467819 RPS6KL1Q9Y6S9 549 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 DOPEY2Q9Y3R5 2298 aa20.71■□□□□ 0.91
COL9A3-207ENST00000467819 PRR19A6NJB7 356 aa20.7■□□□□ 0.9
COL9A3-207ENST00000467819 CYSRT1A8MQ03 144 aa20.7■□□□□ 0.9
COL9A3-207ENST00000467819 SPOPO43791 374 aa20.7■□□□□ 0.9
COL9A3-207ENST00000467819 PECAM1P16284 738 aaPredicted RBP20.7■□□□□ 0.9
COL9A3-207ENST00000467819 ZNF28P17035 718 aa20.7■□□□□ 0.9
COL9A3-207ENST00000467819 NFKB1P19838 968 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms