RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, human

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRCH3-211	ENST00000466054	MMP24	Q9Y5R2	645 aa		4.18	□□□□□ -1.74
LRCH3-211	ENST00000466054	SNX8	Q9Y5X2	465 aa		4.18	□□□□□ -1.74
LRCH3-211	ENST00000466054	PDS5A	Q29RF7	1337 aa	Known RBP	4.18	□□□□□ -1.74
LRCH3-211	ENST00000466054	PASK	Q96RG2	1323 aa		4.18	□□□□□ -1.74
LRCH3-211	ENST00000466054	SAA2-SAA4	A0A096LPE2	208 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054		A0A1W2PR77	199 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PLSCR5	A0PG75	271 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	TMEM8B	A6NDV4	472 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	HNRNPCL2	B2RXH8	293 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	ZNF587B	E7ETH6	402 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SERPINB2	P05120	415 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SAT1	P21673	171 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	ACSL1	P33121	698 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	GNL1	P36915	607 aa	Predicted RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	MMP14	P50281	582 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PNLIPRP2	P54317	469 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	EEF1A1	P68104	462 aa	Known RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	STK4	Q13043	487 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	KCNC3	Q14003	757 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	MVP	Q14764	893 aa	Known RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SYT16	Q17RD7	645 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	C15orf59	Q2T9L4	293 aa	Predicted RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	KRTCAP3	Q53RY4	240 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	EEF1A1P5	Q5VTE0	462 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	TMED8	Q6PL24	325 aa	Predicted RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PRSS57	Q6UWY2	283 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	UNQ6126/PRO20091	Q6UXV3	157 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PM20D2	Q8IYS1	436 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SCYL3	Q8IZE3	742 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SPEM1	Q8N4L4	309 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	EMC1	Q8N766	993 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	POC5	Q8NA72	575 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	OR5R1	Q8NH85	324 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	LNX1	Q8TBB1	728 aa	Predicted RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	C1QTNF4	Q9BXJ3	329 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PSD3	Q9NYI0	1048 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	DNAJB4	Q9UDY4	337 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	MALT1	Q9UDY8	824 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PADI1	Q9ULC6	663 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	PCDHAC2	Q9Y5I4	1007 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	CGNL1	Q0VF96	1302 aa		4.17	□□□□□ -1.74
LRCH3-211	ENST00000466054	LOC100509620	A0A075B734	347 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	IGHV4OR15-8	A0A075B7B6	117 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054		A0A0B4J293	547 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054		A0A1W2PP11	408 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	OR2A25	A4D2G3	310 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	CTDSP2	O14595	271 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	PAPSS1	O43252	624 aa	Predicted RBP	4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	BUD23	O43709	281 aa	Known RBP	4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	GH2	P01242	217 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	AFP	P02771	609 aa	Known RBP	4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	CTSC	P53634	463 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	ERVFC1-1	P60608	527 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SLC20A2	Q08357	652 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SPOCK1	Q08629	439 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	ZNF234	Q14588	700 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	NTRK2	Q16620	822 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TMEM35A	Q53FP2	167 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	KRT79	Q5XKE5	535 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TMEM198	Q66K66	360 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SPSB3	Q6PJ21	355 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	GFRAL	Q6UXV0	394 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	CLEC17A	Q6ZS10	378 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TUBA1A	Q71U36	451 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SATL1	Q86VE3	508 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TMEM219	Q86XT9	240 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	KMT5C	Q86Y97	462 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	RASGEF1C	Q8N431	466 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	ACVR1C	Q8NER5	493 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	GSDMB	Q8TAX9	411 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	UTP15	Q8TED0	518 aa	Known RBP	4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	DUSP19	Q8WTR2	217 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SLC20A1	Q8WUM9	679 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	SEMA3C	Q99985	751 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TUBA1C	Q9BQE3	449 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	OSGEPL1	Q9H4B0	414 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	GIMAP4	Q9NUV9	329 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	PAG1	Q9NWQ8	432 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	TERF2IP	Q9NYB0	399 aa		4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	WSB2	Q9NYS7	404 aa	Predicted RBP	4.16	□□□□□ -1.74
LRCH3-211	ENST00000466054	CLGN	O14967	610 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	AHCYL1	O43865	530 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	GJB3	O75712	270 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	KCNK5	O95279	499 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	SNRNP70	P08621	437 aa	Known RBP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	MYOD1	P15172	320 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	ZNF23	P17027	643 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	KCNA5	P22460	613 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	ACTN2	P35609	894 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	EIF2D	P41214	584 aa	Known RBP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	NRIP1	P48552	1158 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	TAF6	P49848	677 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	POU3F1	Q03052	451 aa	Predicted RBP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	REL	Q04864	619 aa	Predicted RBP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	ZBTB17	Q13105	803 aa		4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	FAM109B	Q6ICB4	259 aa	Predicted RBP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
LRCH3-211	ENST00000466054	PLEKHM3	Q6ZWE6	761 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms