RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 USP24Q9UPU5 2620 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 PMS2P1A4D2B8 440 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 NTN3O00634 580 aaPredicted RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 GAPDHSO14556 408 aaPredicted RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 KRT37O76014 449 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 APRTP07741 180 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 ITGALP20701 1170 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 RPL10P27635 214 aaKnown RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 MC4RP32245 332 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 VPS41P49754 854 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 ZNF140P52738 457 aaPredicted RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 DRG2P55039 364 aaKnown RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 INHBCP55103 352 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 TRIP13Q15645 432 aaPredicted RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 FNBP1LQ5T0N5 605 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 TMEM220Q6QAJ8 160 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 TAS2R42Q7RTR8 314 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 LINC00523Q86TU6 105 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 TRIM48Q8IWZ4 208 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 RASGEF1AQ8N9B8 481 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 RTP4Q96DX8 246 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 AHCYL2Q96HN2 611 aaKnown RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 PAK5Q9P286 719 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 FEZ2Q9UHY8 353 aaPredicted RBP18.42■□□□□ 0.54
USP39-209ENST00000458268 JRKLQ9Y4A0 524 aa18.42■□□□□ 0.54
USP39-209ENST00000458268 ZW10O43264 779 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 B4GAT1O43505 415 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 KIF5CO60282 957 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 F3P13726 295 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 SLC2A4P14672 509 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 VCLP18206 1134 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 MPSTP25325 297 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 RPL22P35268 128 aaKnown RBP18.41■□□□□ 0.54
USP39-209ENST00000458268 HADHAP40939 763 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 PDX1P52945 283 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 CTSCP53634 463 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 B4GALNT1Q00973 533 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 HHEXQ03014 270 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 ZNF547Q8IVP9 402 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 CACTIN-AS1Q8N1I8 211 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 BEND7Q8N7W2 519 aaPredicted RBP18.41■□□□□ 0.54
USP39-209ENST00000458268 DDHD1Q8NEL9 900 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 DCUN1D1Q96GG9 259 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 NAF1Q96HR8 494 aaKnown RBP18.41■□□□□ 0.54
USP39-209ENST00000458268 NUDT22Q9BRQ3 303 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 AP1M1Q9BXS5 423 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 STRADBQ9C0K7 418 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 ARNT2Q9HBZ2 717 aa18.41■□□□□ 0.54
USP39-209ENST00000458268 CACNA1BQ00975 2339 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 GPR89AB7ZAQ6 455 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 CHUKO15111 745 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 LDB2O43679 373 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 GPR89BP0CG08 455 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 PRSS56P0CW18 603 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 HGFP14210 728 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 PNLIPP16233 465 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 RBMS1P29558 406 aaKnown RBP18.4■□□□□ 0.54
USP39-209ENST00000458268 GRIA1P42261 906 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 CDH17Q12864 832 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 RTP5Q14D33 572 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 SNAP47Q5SQN1 464 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 C19orf48Q6RUI8 117 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 SLC9B2Q86UD5 537 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 PIM3Q86V86 326 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 C17orf82Q86X59 251 aaPredicted RBP18.4■□□□□ 0.54
USP39-209ENST00000458268 JAMLQ86YT9 394 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 SFRP1Q8N474 314 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 SGF29Q96ES7 293 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 TMEM74Q96NL1 305 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 TIMM29Q9BSF4 260 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 POLR1BQ9H9Y6 1135 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 TTC7AQ9ULT0 858 aaPredicted RBP18.4■□□□□ 0.54
USP39-209ENST00000458268 PSMD13Q9UNM6 376 aa18.4■□□□□ 0.54
USP39-209ENST00000458268 ACACAQ13085 2346 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 CCDC187A0A096LP49 1063 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 USP27XA6NNY8 438 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 POP7O75817 140 aaKnown RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 IDSP22304 550 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 MSNP26038 577 aaKnown RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 CDKN1CP49918 316 aaPredicted RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 XIAPP98170 497 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 MSLNQ13421 630 aaPredicted RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 IYDQ6PHW0 289 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 TMPRSS9Q7Z410 1059 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 KLHDC8BQ8IXV7 354 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 WDR36Q8NI36 951 aaKnown RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 HNRNPLLQ8WVV9 542 aaKnown RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 ULK4Q96C45 1275 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 CCDC97Q96F63 343 aaPredicted RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 PBKQ96KB5 322 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 SEMA6CQ9H3T2 930 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 SCHIP1Q9P0W5 487 aaPredicted RBP18.39■□□□□ 0.53
USP39-209ENST00000458268 PISDQ9UG56 409 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 APC2O95996 2303 aa18.39■□□□□ 0.53
USP39-209ENST00000458268 OR51F1A6NGY5 319 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 OR52A4PA6NMU1 304 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 ERI2A8K979 691 aaKnown RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 TLX3O43711 291 aaPredicted RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 CPNE6O95741 557 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 VIPP01282 170 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms