RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TYW5A2RUC4 315 aaKnown RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 SYCE1LA8MT33 242 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 EI24O14681 340 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 TBX18O95935 607 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 UMPSP11172 480 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 ADARP55265 1226 aaKnown RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 NUP107P57740 925 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 CTBSQ01459 385 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 RAD51Q06609 339 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 TSNQ15631 228 aaKnown RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 FXNQ16595 210 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 NFE2Q16621 373 aaPredicted RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 PDCD4Q53EL6 469 aaKnown RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 PAGE3Q5JUK9 113 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 SYVN1Q86TM6 617 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 TMEM199Q8N511 208 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 FUBP1Q96AE4 644 aaKnown RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 VPS33AQ96AX1 596 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 VWCEQ96DN2 955 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 FBXL20Q96IG2 436 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 PHF12Q96QT6 1004 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 NPLQ9BXD5 320 aaPredicted RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 EBF1Q9UH73 591 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 LEF1Q9UJU2 399 aaPredicted RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 ANAPC2Q9UJX6 822 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 PCTPQ9UKL6 214 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 CDH7Q9ULB5 785 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 TIMM22Q9Y584 194 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 HEMK1Q9Y5R4 338 aaPredicted RBP16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 VWA8A3KMH1 1905 aa16.25■□□□□ 0.19
CLCNKA-203ENST00000439316 KANSL1LA0AUZ9 987 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 FAM92AA1XBS5 289 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 TMEM189-UBE2V1I3L0A0 370 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 BAIAP3O94812 1187 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ESRRBO95718 433 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 SERPINF2P08697 491 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 VARSP26640 1264 aaKnown RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 OR1E1P30953 314 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 CAPGP40121 348 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 AFTPHQ6ULP2 937 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 FAM43BQ6ZT52 329 aaPredicted RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 MIB1Q86YT6 1006 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 NPAS4Q8IUM7 802 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 KIAA2013Q8IYS2 634 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 TBC1D21Q8IYX1 336 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 DNAJB14Q8TBM8 379 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 CYGBQ8WWM9 190 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 MYEOVQ96EZ4 313 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 OLA1Q9NTK5 396 aaKnown RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 SMPD3Q9NY59 655 aaPredicted RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 MARCH2Q9P0N8 246 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 PCDH10Q9P2E7 1040 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ZNF639Q9UID6 485 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ZNF225Q9UK10 706 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 FAM50BQ9Y247 325 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 FADS3Q9Y5Q0 445 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 NPEPPSL1A6NEC2 478 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 TBKBP1A7MCY6 615 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 CDC7O00311 574 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 CLOCKO15516 846 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 UROSP10746 265 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 NCK1P16333 377 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 PRDX3P30048 256 aaKnown RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 FMO4P31512 558 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 MAGEA11P43364 429 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 GALK1P51570 392 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ACBD5Q5T8D3 534 aaPredicted RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 NADSYN1Q6IA69 706 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 TXNDC11Q6PKC3 985 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ABRAXAS1Q6UWZ7 409 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 PATL1Q86TB9 770 aaKnown RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 C12orf43Q96C57 262 aaKnown RBP16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 SLC30A3Q99726 388 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 MGME1Q9BQP7 344 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 ZIM2Q9NZV7 527 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 SPO11Q9Y5K1 396 aa16.24■□□□□ 0.19
CLCNKA-203ENST00000439316 CROCCQ5TZA2 2017 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 CCDC154A6NI56 674 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 HOXA2O43364 376 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 SNAP91O60641 907 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 SLC22A3O75751 556 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 MLYCDO95822 493 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 CHEK2O96017 543 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 C1RP00736 705 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 PSMA3P25788 255 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 ITGB8P26012 769 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 RPS9P46781 194 aaKnown RBP16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 POLR2JP52435 117 aaKnown RBP16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 UFM1P61960 85 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 ERVK-8P63133 956 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 AASDHQ4L235 1098 aaPredicted RBP16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 CYBRD1Q53TN4 286 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 FBXO48Q5FWF7 155 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 USP51Q70EK9 711 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 IFNEQ86WN2 208 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 NKAPQ8N5F7 415 aaKnown RBP16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 DHRSXQ8N5I4 330 aa16.23■□□□□ 0.19
CLCNKA-203ENST00000439316 OR2T11Q8NH01 316 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms