RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CD160O95971 181 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 C8AP07357 584 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 SNRPB2P08579 225 aaKnown RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 CAMK1Q14012 370 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 LRP8Q14114 963 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PDK3Q15120 406 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TPGS2Q68CL5 300 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CXorf57Q6NSI4 855 aaKnown RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 DDX53Q86TM3 631 aaKnown RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 SATL1Q86VE3 508 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CDYL2Q8N8U2 506 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PDZD8Q8NEN9 1154 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 OR52B6Q8NGF0 335 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ADAMTS19Q8TE59 1207 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 DDI1Q8WTU0 396 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TWIST2Q8WVJ9 160 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PPP2R3CQ969Q6 453 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 SLC29A1Q99808 456 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 BOCQ9BWV1 1114 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 IL21Q9HBE4 155 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ZMYM5Q9UJ78 669 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CCL26Q9Y258 94 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 NOTCH4Q99466 2003 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ANAPC1Q9H1A4 1944 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 A0A0J9YYE9 177 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 NRP2O60462 931 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CRCPO75575 148 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 F11P03951 625 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 NCK1P16333 377 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FDXRP22570 491 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 GRIA3P42263 894 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MAPKAPK2P49137 400 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 KPNA1P52294 538 aaPredicted RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 CDH4P55283 916 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 DNAJB13P59910 316 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ARF5P84085 180 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CLCQ05315 142 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TRAF2Q12933 501 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CDH18Q13634 790 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MTX3Q5HYI7 312 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 SPPL2CQ8IUH8 684 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 APLFQ8IW19 511 aaPredicted RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 BBS7Q8IWZ6 715 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CLP1Q92989 425 aaKnown RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 TCEAL4Q96EI5 215 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MYRFLQ96LU7 910 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 BIRC8Q96P09 236 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 GBP5Q96PP8 586 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TRIB3Q96RU7 358 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CCDC28BQ9BUN5 200 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PBX4Q9BYU1 374 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ZBP1Q9H171 429 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TNKS2Q9H2K2 1166 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MEAF6Q9HAF1 191 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CFAP97Q9P2B7 532 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MAP10Q9P2G4 905 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PSMD13Q9UNM6 376 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 COMMD10Q9Y6G5 202 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 A0A1B0GVM2 712 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ZNF839A8K0R7 811 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FGF1P05230 155 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CAPN3P20807 821 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 BMPR1AP36894 532 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CCR2P41597 374 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 HK3P52790 923 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 YBEYP58557 167 aaPredicted RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 RABL3Q5HYI8 236 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FAM45BPQ6NSW5 357 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FAM151BQ6UXP7 276 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 APCDD1Q8J025 514 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CLYBLQ8N0X4 340 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 MYO1HQ8N1T3 1032 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FBXO39Q8N4B4 442 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 FAM45AQ8TCE6 357 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 CANT1Q8WVQ1 401 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 EME1Q96AY2 570 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 TMEM74Q96NL1 305 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 PSKH2Q96QS6 385 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ATOH8Q96SQ7 321 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 AARSD1Q9BTE6 412 aaKnown RBP9.39□□□□□ -0.91
CUX1-206ENST00000437600 FAM8A1Q9UBU6 413 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 ATG2AQ2TAZ0 1938 aa9.39□□□□□ -0.91
CUX1-206ENST00000437600 WDFY4Q6ZS81 3184 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 VPS13AQ96RL7 3174 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 EPOPA6NHQ4 379 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 PDLIM1O00151 329 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 AZIN1O14977 448 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 STX7O15400 261 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 CLDN11O75508 207 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 TMCC1O94876 653 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 PAPSS2O95340 614 aaPredicted RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 LRG1P02750 347 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 MTHFD1P11586 935 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 HLA-DPA1P20036 260 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 PRDX6P30041 224 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 CSKP41240 450 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 NTHL1P78549 312 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 TRIM25Q14258 630 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 CBX2Q14781 532 aaPredicted RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 ARMC12Q5T9G4 340 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms