RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 LDLRP01130 860 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 HSPA1AP0DMV8 641 aaKnown RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 HSPA1BP0DMV9 641 aaKnown RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 ATP1A3P13637 1013 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 ALDH4A1P30038 563 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 PIK3CAP42336 1068 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 PPIGQ13427 754 aaKnown RBP eCLIP3.16□□□□□ -1.91e-9■□□□□ 9.8
CLK1-204ENST00000432425 TBCEQ15813 527 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 WDR38Q5JTN6 314 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 NSUN5P2Q63ZY6 315 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 LCN10Q6JVE6 187 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 CYP20A1Q6UW02 462 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 PACS1Q6VY07 963 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 PIWIL4Q7Z3Z4 852 aaKnown RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 CPLX4Q7Z7G2 160 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 CCDC190Q86UF4 302 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 RNF168Q8IYW5 571 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 CNPY4Q8N129 248 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 TMTC2Q8N394 836 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 EMC1Q8N766 993 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 FRMD1Q8N878 549 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 CTCFLQ8NI51 663 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 LGALS12Q96DT0 336 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 SEPT5Q99719 369 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 FSD1Q9BTV5 496 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 TMEM39BQ9GZU3 492 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 BICC1Q9H694 974 aaKnown RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 POLR1BQ9H9Y6 1135 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 TRPC7Q9HCX4 862 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 KLHL9Q9P2J3 617 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 PNMA2Q9UL42 364 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 LAS1LQ9Y4W2 734 aaKnown RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 A0A1W2PPI3 338 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 A0A1W2PQF6 199 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 C15orf62A8K5M9 175 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 MAP2K7O14733 419 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 CLIC2O15247 247 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 HCRTR2O43614 444 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 ICAM1P05362 532 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 CLEC3BP05452 202 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 CHRNB4P30926 498 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 KRT9P35527 623 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 RGS2P41220 211 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 TAS2R40P59535 323 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 KIR2DS3Q14952 304 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 TSTQ16762 297 aaKnown RBP3.15□□□□□ -1.9
CLK1-204ENST00000432425 HSP90AB4PQ58FF6 505 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 INTS11Q5TA45 600 aaKnown RBP3.15□□□□□ -1.9
CLK1-204ENST00000432425 ARHGAP17Q68EM7 881 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 SLC5A8Q8N695 610 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 RBM15BQ8NDT2 890 aaKnown RBP3.15□□□□□ -1.9
CLK1-204ENST00000432425 KCNG4Q8TDN1 519 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 LITAFQ99732 161 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 EPB41L5Q9HCM4 733 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 PGAP2Q9UHJ9 254 aa3.15□□□□□ -1.9
CLK1-204ENST00000432425 PRAG1Q86YV5 1406 aa3.15□□□□□ -1.91
CLK1-204ENST00000432425 A0A0G2JNG1 304 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 H0YIN7 160 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 NR3C1P04150 777 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 KRT19P08727 400 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ELF1P32519 619 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 CTSCP53634 463 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 RPS3AP61247 264 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 MBTD1Q05BQ5 628 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 NIPAL4Q0D2K0 466 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 KIR2DS5Q14953 304 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 C14orf177Q52M58 125 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 SOWAHCQ53LP3 525 aaPredicted RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 TECRLQ5HYJ1 363 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 LRIF1Q5T3J3 769 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 PLXDC2Q6UX71 529 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 CLEC4GQ6UXB4 293 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 MMS22LQ6ZRQ5 1243 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 Q75L30 129 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ATG9AQ7Z3C6 839 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 TRPT1Q86TN4 253 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 ARHGAP12Q8IWW6 846 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 HACE1Q8IYU2 909 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 GBGT1Q8N5D6 347 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 GCSAMQ8N6F7 178 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 PCYOX1LQ8NBM8 494 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 NAXEQ8NCW5 288 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 IL17REQ8NFR9 667 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 OR8K5Q8NH50 307 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 RFFLQ8WZ73 363 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ARHGEF2Q92974 986 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 PERPQ96FX8 193 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 EGLN2Q96KS0 407 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 WDFY2Q96P53 400 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 SLC26A6Q9BXS9 759 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 PDZD7Q9H5P4 517 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 SLC52A3Q9NQ40 469 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 IRAK4Q9NWZ3 460 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 EHD2Q9NZN4 543 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 NOTCH3Q9UM47 2321 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ANTXRLA6NF34 631 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 HIST1H2ABP04908 130 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 TFAP2AP05549 437 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 PATE4P0C8F1 98 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 HIST1H2ADP20671 130 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms