RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 NET1Q7Z628 596 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CADM2Q8N3J6 435 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 COX18Q8N8Q8 333 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DNAJB14Q8TBM8 379 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 BRSK1Q8TDC3 778 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 UPF1Q92900 1129 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 NXF3Q9H4D5 531 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 RCOR3Q9P2K3 495 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 OAS3Q9Y6K5 1087 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC88CQ9P219 2028 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 LRATO95237 230 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 IL33O95760 270 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DBTP11182 482 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 NDUFS1P28331 727 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CD52P31358 61 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CTSOP43234 321 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 FOXK1P85037 733 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DPYSQ14117 519 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SNAPC1Q16533 368 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CPSF6Q16630 551 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DENND5AQ6IQ26 1287 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 FBXO15Q8NCQ5 510 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 C7orf57Q8NEG2 295 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TNFAIP8L1Q8WVP5 186 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MFSD14AQ96MC6 490 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF639Q9UID6 485 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MAGEL2Q9UJ55 1249 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SCDO00767 359 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SYN3O14994 580 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 PTPRAP18433 802 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 FGFR3P22607 806 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 PSMA1P25786 263 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CORO1AP31146 461 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TSPAN5P62079 268 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TLR1Q15399 786 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 NIPAL1Q6NVV3 410 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CATSPERGQ6ZRH7 1159 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 C3orf67Q6ZVT6 689 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ANKS1BQ7Z6G8 1248 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CAND1Q86VP6 1230 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF615Q8N8J6 731 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SHC3Q92529 594 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 KCNJ9Q92806 393 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 HAPLN3Q96S86 360 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TRMOQ9BU70 441 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MAF1Q9H063 256 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 MRPS30Q9NP92 439 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 OSGEPQ9NPF4 335 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM5Q9Y2B1 443 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 PIGBOS1A0A0B4J2F0 54 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ANXA2P2A6NMY6 339 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ANXA2P07355 339 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CDK9P50750 372 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 RAB30Q15771 203 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 B3GNT6Q6ZMB0 384 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TSHZ1Q6ZSZ6 1077 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TMC3Q7Z5M5 1100 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 HID1Q8IV36 788 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 PIWIL2Q8TC59 973 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 HOPXQ9BPY8 73 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 TBL1XR1Q9BZK7 514 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GMEB1Q9Y692 573 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 DIP2BQ9P265 1576 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF638Q14966 1978 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ASLP04424 464 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 ITIH1P19827 911 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 RBL1P28749 1068 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 KHKP50053 298 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CEBPGP53567 150 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CCZ1BP86790 482 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 CCZ1P86791 482 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GHRHRQ02643 423 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 C2orf80Q0P641 193 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SYCE2Q6PIF2 218 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 VITQ6UXI7 678 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 REXO1L1PQ8IX06 675 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 OR4C15Q8NGM1 316 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SMPDL3BQ92485 455 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 PIH1D1Q9NWS0 290 aaKnown RBP6.81□□□□□ -1.32
SCN1A-204ENST00000423058 GDAP2Q9NXN4 497 aa6.81□□□□□ -1.32
SCN1A-204ENST00000423058 SLC30A4O14863 429 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PGLSO95336 258 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PROCP04070 461 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C8GP07360 202 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 THRBP10828 461 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PVALBP20472 110 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ACVR2AP27037 513 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 MPIP34949 423 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 NRF1Q16656 503 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 FNBP1LQ5T0N5 605 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CCSAPQ6IQ19 270 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 LRRC69Q6ZNQ3 347 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF571Q7Z3V5 609 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF433Q8N7K0 673 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ARNTL2Q8WYA1 636 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 COQ8BQ96D53 544 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 BORCS8Q96FH0 119 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC115Q96NT0 180 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ACO2Q99798 780 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms