RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 C7P10643 843 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 ATP1B2P14415 290 aaPredicted RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 MAT2AP31153 395 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 SKIV2L2P42285 1042 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 IL9RQ01113 521 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 SIGLEC14Q08ET2 396 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 TUBB8Q3ZCM7 444 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 N4BP2L1Q5TBK1 243 aaPredicted RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 AGAP9Q5VTM2 703 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 LVRNQ6Q4G3 990 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 KYAT3Q6YP21 454 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 SH2D5Q6ZV89 423 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 DET1Q7L5Y6 550 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 PIM3Q86V86 326 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 KLK6Q92876 244 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 CLDN23Q96B33 292 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 BIRC8Q96P09 236 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 GPR21Q99679 349 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 CAPS2Q9BXY5 557 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 SLC17A9Q9BYT1 436 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 MLXIPLQ9NP71 852 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 ITM2CQ9NQX7 267 aa16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 USP36Q9P275 1121 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 ZFR2Q9UPR6 939 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-202ENST00000421922 NUMA1Q14980 2115 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 IGLV3-16A0A075B6K0 115 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 MAGEC1O60732 1142 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 TRIM16O95361 564 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 PAK4O96013 591 aaPredicted RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 APOA4P06727 396 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 LTA4HP09960 611 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 ITGB6P18564 788 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 CA5AP35218 305 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 MDH1P40925 334 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 MAGEA9P43362 315 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 CBX1P83916 185 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 IRF9Q00978 393 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 FZD5Q13467 585 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 GAS6Q14393 721 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 CSHL1Q14406 222 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 AGERQ15109 404 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 TTLL9Q3SXZ7 439 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 CCDC153Q494R4 210 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 TMEM259Q4ZIN3 620 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 ADAMTSL4Q6UY14 1074 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 MACC1Q6ZN28 852 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 NKAPQ8N5F7 415 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 CLDN19Q8N6F1 224 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 KCTD4Q8WVF5 259 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 SREK1Q8WXA9 508 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 HIC2Q96JB3 615 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 RUVBL2Q9Y230 463 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 PLLPQ9Y342 182 aa16.93■□□□□ 0.3
CCDC28B-202ENST00000421922 MTX2O75431 263 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 KLHL2O95198 593 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 ASMTLO95671 621 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 FTH1P02794 183 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 DCNP07585 359 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 CCDC166P0CW27 439 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 CD9P21926 228 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 ACSL1P33121 698 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 SLC26A3P40879 764 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 RGS4P49798 205 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 IRX4P78413 519 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 IRF4Q15306 451 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 WSCD2Q2TBF2 565 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 PNCKQ6P2M8 343 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 TRIM69Q86WT6 500 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 ARMC2Q8NEN0 867 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 C1QTNF2Q9BXJ5 285 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 WDR26Q9H7D7 661 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 NMRAL1Q9HBL8 299 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 CD93Q9NPY3 652 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 PHPT1Q9NRX4 125 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 SLC17A7Q9P2U7 560 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 ADAM21Q9UKJ8 722 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 TMPRSS11EQ9UL52 423 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 OAS3Q9Y6K5 1087 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 PRSS21Q9Y6M0 314 aa16.92■□□□□ 0.3
CCDC28B-202ENST00000421922 FAM86C2PA6NEL3 165 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 K7ESM1 405 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 GPR37L1O60883 481 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 ZNF37AP17032 561 aaPredicted RBP16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 CCR3P51677 355 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 PGGT1BP53609 377 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 PPP2CBP62714 309 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 GNGT1P63211 74 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 PPP2CAP67775 309 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 GUCY1A3Q02108 690 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 MPP2Q14168 576 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 LRRC8EQ6NSJ5 796 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 CDHR3Q6ZTQ4 885 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 OTOAQ7RTW8 1153 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 CLEC14AQ86T13 490 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 HEATR4Q86WZ0 1026 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 CAMKK1Q8N5S9 505 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 SIDT2Q8NBJ9 832 aaKnown RBP16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 DENND6BQ8NEG7 585 aa16.91■□□□□ 0.3
CCDC28B-202ENST00000421922 ASB12Q8WXK4 309 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms