RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IDNKQ5T6J7 187 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 BORAQ6PGQ7 559 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SEC14L3Q9UDX4 400 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 STXBP5LQ9Y2K9 1186 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 FKBP7Q9Y680 259 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TNFRSF11BO00300 401 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 FGBP02675 491 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ADH6P28332 368 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 FMO4P31512 558 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ADGRF2Q8IZF7 708 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 HDAC2Q92769 488 aaKnown RBP12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TRIM36Q9NQ86 728 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TLR6Q9Y2C9 796 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 DLG5Q8TDM6 1919 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 BORCS7-ASMTA0A0B4J1R7 106 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CCNB2O95067 398 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 FGF1P05230 155 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 RPA4Q13156 261 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 QPCTQ16769 361 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 USP45Q70EL2 814 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 OR4A15Q8NGL6 344 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SETD6Q8TBK2 473 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF606Q8WXB4 792 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 MARK4Q96L34 752 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SAV1Q9H4B6 383 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-206ENST00000409809 RGCCQ9H4X1 137 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF304Q9HCX3 659 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 GFOD1Q9NXC2 390 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SREBF2Q12772 1141 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF730Q6ZMV8 503 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ASB7Q9H672 318 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 BLOC1S4Q9NUP1 217 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SLC6A3Q01959 620 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SULT2A1Q06520 285 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 OGFRL1Q5TC84 451 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 RANBP3LQ86VV4 465 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ARMC10Q8N2F6 343 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 KLHL36Q8N4N3 616 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PPLO60437 1756 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 RFPL1O75677 317 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PDHA2P29803 388 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SLC3A1Q07837 685 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 VSTM1Q6UX27 236 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PTGR2Q8N8N7 351 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 BPIFB1Q8TDL5 484 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 AP2M1Q96CW1 435 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 FCRL4Q96PJ5 515 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 TM9SF2Q99805 663 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 EIF2B3Q9NR50 452 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 NUFIP1Q9UHK0 495 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 POLR3HQ9Y535 204 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ARL6IP5O75915 188 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CD6P30203 668 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CD97P48960 835 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 EIPR1Q53HC9 387 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ARSHQ5FYA8 562 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF484Q5JVG2 852 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZPBP2Q6X784 338 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SLC9A9Q8IVB4 645 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZC3H7AQ8IWR0 971 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PI4K2AQ9BTU6 479 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 NARFQ9UHQ1 456 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PADI2Q9Y2J8 665 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CBY1Q9Y3M2 126 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 A0A087X0B3 334 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 KERAO60938 352 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 TFEBP19484 476 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 IMPDH1P20839 514 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF81P51508 661 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 FAM198BQ6UWH4 519 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 HSPBAP1Q96EW2 488 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CBWD1Q9BRT8 395 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 YIPF2Q9BWQ6 316 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 C12orf65Q9H3J6 166 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SEMA4BQ9NPR2 832 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PRKYO43930 277 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ACSL4O60488 711 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 AOC1P19801 751 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 TCF7P36402 384 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PEX6Q13608 980 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 MFSD10Q14728 455 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 GXYLT1Q4G148 440 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 DPY19L3Q6ZPD9 716 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 BTF3L4Q96K17 158 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 DNAJC5BQ9UF47 199 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 HLA-DPB1P04440 258 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF3P17036 446 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 AZGP1P25311 298 aaKnown RBP12.79□□□□□ -0.36
COL6A3-206ENST00000409809 HOXD12P35452 270 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CDKN2CP42773 168 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 LCP2Q13094 533 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 GCNT6Q5T4J0 391 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 PLEKHG7Q6ZR37 379 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 MED30Q96HR3 178 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 KLQ9UEF7 1012 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 CRB1P82279 1406 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SALL1Q9NSC2 1324 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 SULT1C2O00338 296 aa12.79□□□□□ -0.36
COL6A3-206ENST00000409809 AURKAO14965 403 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms