RNA–Protein interactions for RNA: ENST00000409627.6

SUMO1-208, Transcript of small ubiquitin-like modifier 1, humanhuman

TSL 3

Gene SUMO1, Length 722 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO1-208ENST00000409627 TRMT10CQ7L0Y3 403 aaKnown RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 LDB1Q86U70 411 aaPredicted RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 RBFAQ8N0V3 343 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 TCEAL3Q969E4 200 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 ZNF514Q96K75 400 aaPredicted RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 PHOX2BQ99453 314 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 ELF4Q99607 663 aaPredicted RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 BOCQ9BWV1 1114 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 FUT8Q9BYC5 575 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 VPS37BQ9H9H4 285 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 MRPL40Q9NQ50 206 aaKnown RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 PPANQ9NQ55 473 aaKnown RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 FSCN3Q9NQT6 498 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 SEMA4GQ9NTN9 838 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 INTS10Q9NVR2 710 aaKnown RBP16.42■□□□□ 0.22
SUMO1-208ENST00000409627 DNAJC28Q9NX36 388 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 SUFUQ9UMX1 484 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 VPS9D1Q9Y2B5 631 aa16.42■□□□□ 0.22
SUMO1-208ENST00000409627 PIKFYVEQ9Y2I7 2098 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 NDUFS3O75489 264 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 CER1O95813 267 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 TNFP01375 233 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 FUCA1P04066 466 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 ATP1B2P14415 290 aaPredicted RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 ZNF7P17097 686 aaPredicted RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 ENGP17813 658 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 RXRGP48443 463 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 HK3P52790 923 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 PMS2P54278 862 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 HLA-BQ31612 363 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 TEDDM1Q5T9Z0 273 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 EMBQ6PCB8 327 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 GALNT7Q86SF2 657 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 GALNT13Q8IUC8 556 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 DENND6AQ8IWF6 608 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 PHACTR4Q8IZ21 702 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 PNPLA1Q8N8W4 532 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 RASGEF1AQ8N9B8 481 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 C2CD4AQ8NCU7 369 aaPredicted RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 AENQ8WTP8 325 aaKnown RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 CDKL2Q92772 493 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 TSACCQ96A04 125 aaPredicted RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 CCDC97Q96F63 343 aaPredicted RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 CARS2Q9HA77 564 aaKnown RBP16.41■□□□□ 0.22
SUMO1-208ENST00000409627 CYP4F12Q9HCS2 524 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 ZFATQ9P243 1243 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 KLF15Q9UIH9 416 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 FBXO5Q9UKT4 447 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 GPR34Q9UPC5 381 aa16.41■□□□□ 0.22
SUMO1-208ENST00000409627 ZFC3H1O60293 1989 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 VPS13AQ96RL7 3174 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 A0A1B0GTQ1 180 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 LNP1A1A4G5 178 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 FAM159BA6NKW6 160 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 H3BM21 787 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 QSOX1O00391 747 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 PRMT5O14744 637 aaPredicted RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 YKT6O15498 198 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 GRID2O43424 1007 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 SGTAO43765 313 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 FOXD2O60548 495 aaPredicted RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 AP2A2O94973 939 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 ACSL3O95573 720 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 S1PR4O95977 384 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 C1QAP02745 245 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 RPS3P23396 243 aaKnown RBP eCLIP16.4■□□□□ 0.224e-8■■■□□ 17.4
SUMO1-208ENST00000409627 GNPDA1P46926 289 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 ARRB1P49407 418 aaPredicted RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 CTSCP53634 463 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 ADARP55265 1226 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 HNRNPKP61978 463 aaKnown RBP eCLIP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 MPP1Q00013 466 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 CTBP1Q13363 440 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 SF3A2Q15428 464 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 BCL7AQ4VC05 210 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 PYCR3Q53H96 274 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 UBAP2Q5T6F2 1119 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 MARK2Q7KZI7 788 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 ASCL5Q7RTU5 278 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 LRRTM4Q86VH4 590 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 SLC26A11Q86WA9 606 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 LRRC6Q86X45 466 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 HID1Q8IV36 788 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 FBF1Q8TES7 1133 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 LPGAT1Q92604 370 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 OR2M4Q96R27 311 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 SLC13A1Q9BZW2 595 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 P2RY12Q9H244 342 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 PARD6AQ9NPB6 346 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 TRNAU1APQ9NX07 287 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 NSMCE4AQ9NXX6 385 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 APOBEC3BQ9UH17 382 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 MOSPD1Q9UJG1 213 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 PCYT1BQ9Y5K3 369 aaPredicted RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 TDRD6O60522 2096 aaKnown RBP16.4■□□□□ 0.22
SUMO1-208ENST00000409627 USP34Q70CQ2 3546 aa16.4■□□□□ 0.22
SUMO1-208ENST00000409627 OTOGLQ3ZCN5 2332 aa16.39■□□□□ 0.21
SUMO1-208ENST00000409627 F8W8V4 182 aa16.39■□□□□ 0.21
SUMO1-208ENST00000409627 KMOO15229 486 aa16.39■□□□□ 0.21
SUMO1-208ENST00000409627 CTIFO43310 598 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms