RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 XPAP23025 273 aaPredicted RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 SPINT3P49223 89 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 LMAN1P49257 510 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 GSK3AP49840 483 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 ARHGEF7Q14155 803 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 STAT4Q14765 748 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 SUZ12Q15022 739 aaKnown RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 HIF1AQ16665 826 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 PCID2Q5JVF3 399 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 FOXR1Q6PIV2 292 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 DBX2Q6ZNG2 339 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 GLT6D1Q7Z4J2 308 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 DNAAF3Q8N9W5 541 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TP53I13Q8NBR0 393 aaPredicted RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 OR13J1Q8NGT2 312 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 BLOC1S5Q8TDH9 187 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 CXorf40AQ8TE69 158 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 STYXQ8WUJ0 223 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 KLHDC7BQ96G42 594 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 WRAP53Q9BUR4 548 aaKnown RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 SLC17A9Q9BYT1 436 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TRIM31Q9BZY9 425 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 DPH5Q9H2P9 285 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TCEAL2Q9H3H9 227 aaPredicted RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 PLAC1Q9HBJ0 212 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 EPB41L5Q9HCM4 733 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 RAD18Q9NS91 495 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 NLE1Q9NVX2 485 aaPredicted RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS53-203ENST00000401468 SOX13Q9UN79 622 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 DMTF1Q9Y222 760 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 PCDHGB2Q9Y5G2 931 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 ARL5AQ9Y689 179 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 ESYT3A0FGR9 886 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SDR42E2A6NKP2 422 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 C2orf81A6NN90 581 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 A8MX80 341 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 GOLGA8MH3BSY2 632 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 TOR1BO14657 336 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SIGLEC6O43699 453 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PCDHGA12O60330 932 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 RECQL5O94762 991 aaPredicted RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 CAPNS1P04632 268 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 BPIP17213 487 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 TPH1P17752 444 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 MGAT1P26572 445 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 ARNTP27540 789 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 TRIM23P36406 574 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 ETV3P41162 512 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 XIAPP98170 497 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SRSF11Q05519 484 aaKnown RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 POU6F1Q14863 301 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 WSCD2Q2TBF2 565 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 COL28A1Q2UY09 1125 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SETMARQ53H47 684 aaPredicted RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 TSTD2Q5T7W7 516 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 HES3Q5TGS1 186 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 ZDHHC20Q5W0Z9 365 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 STEAP4Q687X5 459 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PDPK2PQ6A1A2 396 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 ESRP1Q6NXG1 681 aaKnown RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 WDR93Q6P2C0 686 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 Q6ZSR6 202 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 Q6ZVL8 140 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 KANSL1Q7Z3B3 1105 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 GLRX5Q86SX6 157 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PROSER1Q86XN7 944 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 CCNJLQ8IV13 435 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 RBFAQ8N0V3 343 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PDIK1LQ8N165 341 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 MPP5Q8N3R9 675 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SLC25A45Q8N413 288 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 TMEM151AQ8N4L1 468 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 MFSD2AQ8NA29 543 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 GPR26Q8NDV2 337 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.12□□□□□ -0.951e-7■■■■□ 26.6
VPS53-203ENST00000401468 CDC6Q99741 560 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 EBNA1BP2Q99848 306 aaKnown RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 NAT9Q9BTE0 207 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 GPR63Q9BZJ6 419 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 CCDC86Q9H6F5 360 aaKnown RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 PIH1D1Q9NWS0 290 aaKnown RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 DNAJC28Q9NX36 388 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 SYBUQ9NX95 663 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PKD2L2Q9NZM6 624 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 KLF15Q9UIH9 416 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PNMA8BQ9ULN7 279 aaPredicted RBP9.12□□□□□ -0.95
VPS53-203ENST00000401468 DYRK1BQ9Y463 629 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 HS3ST3A1Q9Y663 406 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 PTPRQQ9UMZ3 2332 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 ATMQ13315 3056 aa9.12□□□□□ -0.95
VPS53-203ENST00000401468 TRBV5-4A0A0C4DH59 114 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ZCWPW2A0A1B0GU75 182 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PRAMEF26H0Y7S4 382 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 NEMP1O14524 444 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 USP1O94782 785 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 TRIM16O95361 564 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PYGLP06737 847 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 CELA2BP08218 269 aaPredicted RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 HOXC4P09017 264 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms