RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 UCP2P55851 309 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 CEBPEQ15744 281 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 CBWD6Q4V339 395 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 FASTKD1Q53R41 847 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF789Q5FWF6 425 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 CBWD3Q5JTY5 395 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 TEX35Q5T0J7 233 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 PSRC1Q6PGN9 363 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 MTSS1LQ765P7 747 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 ABI3BPQ7Z7G0 1075 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 AMZ2Q86W34 360 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 SPATA2LQ8IUW3 424 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 ENDOVQ8N8Q3 282 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 UXS1Q8NBZ7 420 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 NSUN7Q8NE18 718 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 EXOC6Q8TAG9 804 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 GANCQ8TET4 914 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 C17orf50Q8WW18 174 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 GLMPQ8WWB7 406 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 PABPC5Q96DU9 382 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 PDLIM2Q96JY6 352 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 CDRT15Q96T59 188 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 WDR83Q9BRX9 315 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 H2AFJQ9BTM1 129 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 EDEM2Q9BV94 578 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 C1QTNF1Q9BXJ1 281 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 NACAP1Q9BZK3 213 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 TCF7L2Q9NQB0 619 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 FAM212BQ9NTI7 297 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 FOXJ2Q9P0K8 574 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 FBXO40Q9UH90 709 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 GMEB2Q9UKD1 530 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 CHTOPQ9Y3Y2 248 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 U3KQV3 271 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 PDS5BQ9NTI5 1447 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 NPHP3Q7Z494 1330 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 LRRIQ4A6NIV6 560 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 YDJCA8MPS7 323 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 KIF2AO00139 706 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF213O14771 459 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 MTRF1O75570 445 aaKnown RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SLC25A12O75746 678 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 NKX2-2O95096 273 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 VIMP08670 466 aaKnown RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 OR52Z1P0C646 297 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 C8orf89P0DMQ9 161 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 IGFBP2P18065 325 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 VCLP18206 1134 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 EDN2P20800 178 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 CD9P21926 228 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 CDAP32320 146 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 ECT2LQ008S8 904 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 GABPB1Q06547 395 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SCGB2A2Q13296 93 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 RAPSNQ13702 412 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 KCNC3Q14003 757 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SLC39A14Q15043 492 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 RNPS1Q15287 305 aaKnown RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 FAM187BQ17R55 369 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 FBXO43Q4G163 708 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 HERC4Q5GLZ8 1057 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 NOMO2Q5JPE7 1267 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SERTAD4-AS1Q5TG53 156 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 KRT39Q6A163 491 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 LRIG3Q6UXM1 1119 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SLC30A10Q6XR72 485 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SYVN1Q86TM6 617 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 VASH2Q86V25 355 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF410Q86VK4 478 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SERPINA12Q8IW75 414 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 MFN1Q8IWA4 741 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 BATF2Q8N1L9 274 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 LNX2Q8N448 690 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SETD9Q8NE22 299 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 POC1BQ8TC44 478 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 C2CD4CQ8TF44 421 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 ABHD6Q9BV23 337 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 CARD6Q9BX69 1037 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 GORASP2Q9H8Y8 452 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 KIF9Q9HAQ2 790 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 PNPLA3Q9NST1 481 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 EXOC1Q9NV70 894 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 PAG1Q9NWQ8 432 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 SMPD3Q9NY59 655 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-204ENST00000399489 VPS18Q9P253 973 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 HEY2Q9UBP5 337 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 IL17BQ9UHF5 180 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 N6AMT1Q9Y5N5 214 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 WDR62O43379 1518 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 WDR19Q8NEZ3 1342 aa4.09□□□□□ -1.75
HMGB1-204ENST00000399489 A0A1W2PPM1 405 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 C5orf52A6NGY3 159 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 MAGEB17A8MXT2 336 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 FOXO6A8MYZ6 492 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 USP17L23D6RBM5 183 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 F8WDY8 70 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 H0YIV9 168 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 TTI1O43156 1089 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 MED24O75448 989 aa4.09□□□□□ -1.76
HMGB1-204ENST00000399489 KRT6BP04259 564 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms