RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PRAMEF1O95521 474 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 CRTAMO95727 393 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 EML2O95834 649 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 ZNF7P17097 686 aaPredicted RBP16.59■□□□□ 0.25
HMGN4-201ENST00000377575 UGT1A5P35504 534 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 PPM1FP49593 454 aaPredicted RBP16.59■□□□□ 0.25
HMGN4-201ENST00000377575 TMEM115Q12893 351 aaPredicted RBP16.59■□□□□ 0.25
HMGN4-201ENST00000377575 PARP6Q2NL67 630 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.59■□□□□ 0.25
HMGN4-201ENST00000377575 IYDQ6PHW0 289 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 DDHD1Q8NEL9 900 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 OR10G6Q8NH81 332 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 SLC35B2Q8TB61 432 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 NUDT22Q9BRQ3 303 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 TMEM121Q9BTD3 319 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 LRRC40Q9H9A6 602 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 SMOXQ9NWM0 555 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 TMPRSS11EQ9UL52 423 aa16.59■□□□□ 0.25
HMGN4-201ENST00000377575 R3HDM2Q9Y2K5 976 aaKnown RBP16.59■□□□□ 0.25
HMGN4-201ENST00000377575 TRBV23OR9-2A0A075B6M9 112 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 HGSO14964 777 aaPredicted RBP16.58■□□□□ 0.24
HMGN4-201ENST00000377575 ITPKBP27987 946 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 CD1CP29017 333 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 OLIG2Q13516 323 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 TRA2AQ13595 282 aaKnown RBP eCLIP16.58■□□□□ 0.24
HMGN4-201ENST00000377575 RPS6KA1Q15418 735 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 KHDC1Q4VXA5 237 aaKnown RBP16.58■□□□□ 0.24
HMGN4-201ENST00000377575 BROXQ5VW32 411 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF662Q6ZS27 426 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 TMPRSS9Q7Z410 1059 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 PDZD3Q86UT5 571 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 LRRC8AQ8IWT6 810 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 SPACA3Q8IXA5 215 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 KLHDC8BQ8IXV7 354 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 OR4K2Q8NGD2 314 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 OR4D9Q8NGE8 314 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 NAF1Q96HR8 494 aaKnown RBP16.58■□□□□ 0.24
HMGN4-201ENST00000377575 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.58■□□□□ 0.24
HMGN4-201ENST00000377575 DPH1Q9BZG8 443 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 SEMA6CQ9H3T2 930 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 PRDM8Q9NQV8 689 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 PISDQ9UG56 409 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 DNAJC16Q9Y2G8 782 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 PCDHGA7Q9Y5G6 932 aa16.58■□□□□ 0.24
HMGN4-201ENST00000377575 TCRBV7S2A1N4TA0A589 114 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 PDZK1P1A8MUH7 402 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 GAPDHSO14556 408 aaPredicted RBP16.57■□□□□ 0.24
HMGN4-201ENST00000377575 PSMD3O43242 534 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 HGFP14210 728 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 AKT1P31749 480 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 HADHAP40939 763 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 EPHA4P54764 986 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 UCNP55089 124 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 GDF10P55107 478 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 NFATC2Q13469 925 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 SQSTM1Q13501 440 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 GPRC6AQ5T6X5 926 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 MEI1Q5TIA1 1274 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 NKAIN2Q5VXU1 208 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 USP53Q70EK8 1073 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF761Q86XN6 746 aaPredicted RBP16.57■□□□□ 0.24
HMGN4-201ENST00000377575 JAMLQ86YT9 394 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF547Q8IVP9 402 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 TRIM48Q8IWZ4 208 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 RTP4Q96DX8 246 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 CCDC74BQ96LY2 380 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 C19orf43Q9BQ61 176 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 EPB41L1Q9H4G0 881 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 ARNT2Q9HBZ2 717 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 LZTFL1Q9NQ48 299 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 CPNE7Q9UBL6 633 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 SLC23A2Q9UGH3 650 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 PTPRQQ9UMZ3 2332 aa16.57■□□□□ 0.24
HMGN4-201ENST00000377575 IGHV5-10-1A0A0J9YXX1 117 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 GPR39O43194 453 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A9O60656 530 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 KCNJ13O60928 360 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 SRP72O76094 671 aaKnown RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A6P19224 532 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 MSH3P20585 1137 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 IDSP22304 550 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A1P22309 533 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A4P22310 534 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 STIP1P31948 543 aaKnown RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 CSF2RBP32927 897 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A3P35503 534 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF140P52738 457 aaPredicted RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 LIMK2P53671 638 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 TLE3Q04726 772 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 SPARCL1Q14515 664 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 PTPRCAPQ14761 206 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 SEPT7Q16181 437 aaKnown RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 KCTD11Q693B1 232 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 SLC13A5Q86YT5 568 aaPredicted RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF398Q8TD17 642 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 ATG4AQ8WYN0 398 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 ZNF514Q96K75 400 aaPredicted RBP16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A7Q9HAW7 530 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A10Q9HAW8 530 aa16.56■□□□□ 0.24
HMGN4-201ENST00000377575 UGT1A8Q9HAW9 530 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms