RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 C8orf4Q9NR00 106 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 FAM50BQ9Y247 325 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 ARL5AQ9Y689 179 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 ALPLP05186 524 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 ZNF37AP17032 561 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-202ENST00000341753 PIGAP37287 484 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 POLR2JP52435 117 aaKnown RBP22.18■■□□□ 1.14
TRIM28-202ENST00000341753 CST9Q5W186 159 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 DTWD1Q8N5C7 304 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 CCDC138Q96M89 665 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 CCDC90BQ9GZT6 254 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 CATSPERBQ9H7T0 1116 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 GPN2Q9H9Y4 310 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-202ENST00000341753 FAM105AQ9NUU6 356 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 GMIPQ9P107 970 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 UTS2RQ9UKP6 389 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 RBMX2Q9Y388 322 aaKnown RBP22.18■■□□□ 1.14
TRIM28-202ENST00000341753 INMTO95050 263 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 SLC2A3P11169 496 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 FDXRP22570 491 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 NFKBIAP25963 317 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 ZNF135P52742 658 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 HUNKP57058 714 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 LSM3P62310 102 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 AASDHQ4L235 1098 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 SIRPB2Q5JXA9 342 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 UGT3A1Q6NUS8 523 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 RIMKLAQ8IXN7 391 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 TMEM199Q8N511 208 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 BLOC1S5Q8TDH9 187 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 SMARCD1Q96GM5 515 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 CNDP2Q96KP4 475 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 ATOH8Q96SQ7 321 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 TDRD1Q9BXT4 1180 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 MFSD1Q9H3U5 465 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 CARS2Q9HA77 564 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 AIG1Q9NVV5 245 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 NYNRINQ9P2P1 1898 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 F8W810 466 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 SLC7A4O43246 635 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 GOT2P00505 430 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 POMCP01189 267 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 UMPSP11172 480 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 HPCAL1P37235 193 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 MTHFRP42898 656 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 DPY19L1Q2PZI1 675 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 CTU2Q2VPK5 515 aaKnown RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 C8orf59Q8N0T1 100 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 SLC25A51Q9H1U9 297 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 RRAGCQ9HB90 399 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 LEF1Q9UJU2 399 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-202ENST00000341753 PCDHB3Q9Y5E6 796 aa22.17■■□□□ 1.14
TRIM28-202ENST00000341753 EEDO75530 441 aaKnown RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 LCP2Q13094 533 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 DNASE1L3Q13609 305 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 PCBP1Q15365 356 aaKnown RBP eCLIP22.16■■□□□ 1.148e-11■■■■□ 25.9
TRIM28-202ENST00000341753 GNASQ5JWF2 1037 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 GDF6Q6KF10 455 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 SLC16A12Q6ZSM3 486 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 FBXO39Q8N4B4 442 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 GABPB2Q8TAK5 448 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 CASP10Q92851 521 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 FKBP10Q96AY3 582 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 HERC2P3Q9BVR0 1158 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 UXTQ9UBK9 157 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 SEPT3Q9UH03 358 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 RNF112Q9ULX5 631 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 UBA6A0AVT1 1052 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 IRAK2O43187 625 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 HAPLN1P10915 354 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 BRCC3P46736 316 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 EEFSECP57772 596 aaKnown RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 CACNB2Q08289 660 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 TSNQ15631 228 aaKnown RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 TIGD7Q6NT04 549 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 SYVN1Q86TM6 617 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 ABI1Q8IZP0 508 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 TRPV1Q8NER1 839 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 OR13C4Q8NGS5 318 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 FBXO30Q8TB52 745 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 IMP4Q96G21 291 aaKnown RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 TMEM209Q96SK2 561 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 AGO3Q9H9G7 860 aaKnown RBP22.16■■□□□ 1.14
TRIM28-202ENST00000341753 BAG5Q9UL15 447 aa22.16■■□□□ 1.14
TRIM28-202ENST00000341753 ARL5CA6NH57 179 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 E9PAM4 449 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 KPNA4O00629 521 aaPredicted RBP22.15■■□□□ 1.14
TRIM28-202ENST00000341753 IFITM3Q01628 133 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 TIGD5Q53EQ6 642 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 TAF2Q6P1X5 1199 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 ITFG1Q8TB96 612 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 ZFP90Q8TF47 636 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 CDK15Q96Q40 435 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 NOL6Q9H6R4 1146 aaKnown RBP22.15■■□□□ 1.14
TRIM28-202ENST00000341753 TMLHEQ9NVH6 421 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 SUN2Q9UH99 717 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 CLDN25C9JDP6 229 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 CDC7O00311 574 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 THP07101 528 aa22.15■■□□□ 1.14
TRIM28-202ENST00000341753 MMP2P08253 660 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms