RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RTP3Q9BQQ7 232 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 AARSD1Q9BTE6 412 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 ACAT2Q9BWD1 397 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 C9J4A7 227 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 SSR2P43308 183 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CHRNA6Q15825 494 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 AGKQ53H12 422 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 PIWIL4Q7Z3Z4 852 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 TMEM25Q86YD3 366 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 SLC43A3Q8NBI5 491 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 PBX4Q9BYU1 374 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CWH43Q9H720 699 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 HCSTQ9UBK5 93 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 RAB21Q9UL25 225 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 TMCC3Q9ULS5 477 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 INVSQ9Y283 1065 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 NDUFAF1Q9Y375 327 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 OR10H1Q9Y4A9 318 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 NUMBLQ9Y6R0 609 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CYP7B1O75881 506 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CLDN7O95471 211 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 ALDH4A1P30038 563 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 ALDH6A1Q02252 535 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 ACAP2Q15057 778 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 FAM78AQ5JUQ0 283 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 ANXA8L1Q5VT79 327 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 C16orf46Q6P387 395 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 SLC30A9Q6PML9 568 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 OXR1Q8N573 874 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 TTLQ8NG68 377 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 FFAR3O14843 346 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 GPR42O15529 346 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 AKAP10O43572 662 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 RABIFP47224 123 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 FASTKQ14296 549 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 MLF2Q15773 248 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 TJAP1Q5JTD0 557 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 LRRC34Q8IZ02 419 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CDK20Q8IZL9 346 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 C2orf73Q8N5S3 287 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 KCTD14Q9BQ13 255 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 PHF7Q9BWX1 381 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 XPR1Q9UBH6 696 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 HEY2Q9UBP5 337 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 B2RBV5 119 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 AXIN1O15169 862 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 BUD31P41223 144 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 MPP1Q00013 466 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 NAE1Q13564 534 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 RTN4RL1Q86UN2 441 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 PARP9Q8IXQ6 854 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 TRAM1L1Q8N609 369 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 NELL1Q92832 810 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 ZNF334Q9HCZ1 680 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 TCRBV7S2A1N4TA0A589 114 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 PI15O43692 258 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 KCNH1O95259 989 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 HNF4AP41235 474 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ESRRGP62508 458 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 PRKG2Q13237 762 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 CYP1B1Q16678 543 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 APTXQ7Z2E3 356 aaKnown RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 ZSCAN1Q8NBB4 408 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 OR9Q1Q8NGQ5 310 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 CLIP3Q96DZ5 547 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ARHGEF3Q9NR81 526 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 VPS4AQ9UN37 437 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 KRT75O95678 551 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 STK19P49842 368 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 SEMG2Q02383 582 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 CREB5Q02930 508 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 OCA2Q04671 838 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 GPR156Q8NFN8 814 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 SIT1Q9Y3P8 196 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TTC24A2A3L6 582 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 KLHL33A6NCF5 533 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 STK16O75716 305 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 PSMA4P25789 261 aaKnown RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 CHRNA4P43681 627 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 GALK1P51570 392 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 LIMK2P53671 638 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 WNT7BP56706 349 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 RPP38P78345 283 aaKnown RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 STX4Q12846 297 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TRPM8Q7Z2W7 1104 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 SPOCK2Q92563 424 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 OR2M4Q96R27 311 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 PEBP4Q96S96 227 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TRMOQ9BU70 441 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 MAGEE1Q9HCI5 957 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 B4GALT6Q9UBX8 382 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ZNF180Q9UJW8 692 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 GPR34Q9UPC5 381 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 MYO5AQ9Y4I1 1855 aaKnown RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 CCDC162PA2VCL2 907 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 OR5K4A6NMS3 321 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 LIN7AO14910 233 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 CLDN9O95484 217 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ATF6P18850 670 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 HSF5Q4G112 596 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms