RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 COQ5Q5HYK3 327 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 NBPF12Q5TAG4 269 aaPredicted RBP10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 CNSTQ6PJW8 725 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 EPGNQ6UW88 154 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 THRSPQ92748 146 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 FUBP3Q96I24 572 aaKnown RBP eCLIP10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 FEM1CQ96JP0 617 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 SPATA9Q9BWV2 254 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 EBF3Q9H4W6 596 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF37AP17032 561 aaPredicted RBP10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 S100GP29377 79 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 EPHX2P34913 555 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 HID1Q8IV36 788 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 OR52K2Q8NGK3 314 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 OR4A15Q8NGL6 344 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 FCRL2Q96LA5 508 aaPredicted RBP10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 BRD9Q9H8M2 597 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ACP6Q9NPH0 428 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 FPGTO14772 594 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 NDUFS2O75306 463 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ZMPSTE24O75844 475 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 AP5B1Q2VPB7 878 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 SYCE2Q6PIF2 218 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 UPB1Q9UBR1 384 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 FZD10Q9ULW2 581 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ZBTB7AO95365 584 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 IMPDH1P20839 514 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 CLCQ05315 142 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 CTBP1Q13363 440 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF697Q5TEC3 545 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC29A3Q9BZD2 475 aa10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 TRNAU1APQ9NX07 287 aaKnown RBP10.21□□□□□ -0.78
CCDC88A-202ENST00000336838 CNTRLQ7Z7A1 2325 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SLX4Q8IY92 1834 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TSC22D2O75157 780 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 BANF1O75531 89 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CBSLP0DN79 551 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PKMP14618 531 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CBSP35520 551 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM189A2Q15884 450 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM46CQ5VWP2 391 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC9A4Q6AI14 798 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CMC1Q7Z7K0 106 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF467Q7Z7K2 595 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TMC8Q8IU68 726 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 IZUMO1Q8IYV9 350 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 KCTD13Q8WZ19 329 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TAMM41Q96BW9 452 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM136AQ96C01 138 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 C3orf14Q9HBI5 128 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 NECTIN3Q9NQS3 549 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SIRPGQ9P1W8 387 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ISPDA4D126 451 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PDHXO00330 501 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 HPRP00739 348 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SERPINA3P01011 423 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ASPAP45381 313 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF567Q8N184 647 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF781Q8N8C0 355 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PJA1Q8NG27 643 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MARK4Q96L34 752 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 A8MUI8 341 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF99A8MXY4 864 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PPP1R11O60927 126 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TNFRSF21O75509 655 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 NR2F1P10589 423 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ANXA8P13928 327 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 UGCGQ16739 394 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF829Q3KNS6 432 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 NIPAL1Q6NVV3 410 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SATL1Q86VE3 508 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZBTB2Q8N680 514 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZFP14Q9HCL3 533 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TRMT13Q9NUP7 481 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PFDN2Q9UHV9 154 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 AMHP03971 560 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CCNYL3P0C7X3 344 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CENPAP49450 140 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MBTD1Q05BQ5 628 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PLCL1Q15111 1095 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MOGQ16653 247 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZIK1Q3SY52 487 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SNX27Q96L92 541 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 P2RX7Q99572 595 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZFYVE1Q9HBF4 777 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TRPV5Q9NQA5 729 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 VBP1P61758 197 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ECT2LQ008S8 904 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 HSF2Q03933 536 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TUSC3Q13454 348 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FASTKD3Q14CZ7 662 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 LPCAT4Q643R3 524 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 NANOGNBQ7Z5D8 188 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 GAD1Q99259 594 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 S100A13Q99584 98 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF214Q9UL59 606 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TSPAN9O75954 239 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 TAS2R41P59536 307 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MERTKQ12866 999 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PWP1Q13610 501 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms