RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ASCC1Q8N9N2 400 aaKnown RBP13.37□□□□□ -0.27
SKA3-201ENST00000298260 LGALS12Q96DT0 336 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ZNF300Q96RE9 604 aaPredicted RBP13.37□□□□□ -0.27
SKA3-201ENST00000298260 ACOX2Q99424 681 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 SYT17Q9BSW7 474 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 FICDQ9BVA6 458 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 BBS2Q9BXC9 721 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ASPSCR1Q9BZE9 553 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 SNTG2Q9NY99 539 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 AGO1Q9UL18 857 aaKnown RBP13.37□□□□□ -0.27
SKA3-201ENST00000298260 SNX6Q9UNH7 406 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 EIF3LQ9Y262 564 aaKnown RBP13.37□□□□□ -0.27
SKA3-201ENST00000298260 CRYL1Q9Y2S2 319 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 CLDN5O00501 218 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ACKR2O00590 384 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 GNGT2O14610 69 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ITIH1P19827 911 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 NPTX1Q15818 432 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 PKN3Q6P5Z2 889 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 PHYKPLQ8IUZ5 450 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ZNF555Q8NEP9 628 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 ITFG1Q8TB96 612 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 SUN5Q8TC36 379 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 LPAR1Q92633 364 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 NECTIN4Q96NY8 510 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 IRF2BPLQ9H1B7 796 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 CYP3A43Q9HB55 503 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 CPNE5Q9HCH3 593 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 SEMA4BQ9NPR2 832 aaPredicted RBP13.37□□□□□ -0.27
SKA3-201ENST00000298260 HACD3Q9P035 362 aa13.37□□□□□ -0.27
SKA3-201ENST00000298260 UNCXA6NJT0 531 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 UBXN8O00124 270 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 MGEA5O60502 916 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 BEST1O76090 585 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 PGLSO95336 258 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 MT-ND2P03891 347 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 PFKLP17858 780 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 IL12AP29459 219 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 ACADSBP45954 432 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 NPY2RP49146 381 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 CDKN2DP55273 166 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 GALK2Q01415 458 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 Q5BKY6 102 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 DCP2Q8IU60 420 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 PIK3C3Q8NEB9 887 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 SLC2A14Q8TDB8 520 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 STON2Q8WXE9 905 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 ZHX1-C8orf76Q96EF9 292 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 EGLN2Q96KS0 407 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 BARD1Q99728 777 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 KIFC1Q9BW19 673 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 PRRG3Q9BZD7 231 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 TNKS2Q9H2K2 1166 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 NRBP2Q9NSY0 501 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 PAQR5Q9NXK6 330 aaPredicted RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 PCDHGA10Q9Y5H3 936 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 SIP14410 1827 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 LOC100130705A0A1B0GUX0 176 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 SLC22A1O15245 554 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 CST1P01037 141 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 EIF2S1P05198 315 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 ABCB1P08183 1280 aaPredicted RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 SERPINB10P48595 397 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 TNFAIP2Q03169 654 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 SIGIRRQ6IA17 410 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 ZCCHC8Q6NZY4 707 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 PTGR2Q8N8N7 351 aaPredicted RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 PAPD5Q8NDF8 572 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 PABPC5Q96DU9 382 aaKnown RBP13.36□□□□□ -0.27
SKA3-201ENST00000298260 KIF12Q96FN5 646 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 TBCDQ9BTW9 1192 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 RASSF1Q9NS23 344 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 OPTCQ9UBM4 332 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.36□□□□□ -0.27
SKA3-201ENST00000298260 MYLKQ15746 1914 aa13.36□□□□□ -0.27
SKA3-201ENST00000298260 LOC105371267A0A1B0GV96 52 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CCDC154A6NI56 674 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 BBIP1A8MTZ0 92 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ZBTB42B2RXF5 422 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ANGPTL1O95841 491 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 FYNP06241 537 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 LTA4HP09960 611 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 IMPDH1P20839 514 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 EPHA2P29317 976 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 GGT5P36269 586 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 HADHAP40939 763 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ZFP36L2P47974 494 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 CDK5R2Q13319 367 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 MXD4Q14582 209 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 CLCA4Q14CN2 919 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TMEM132BQ14DG7 1078 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SNX17Q15036 470 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SMU1Q2TAY7 513 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CELF3Q5SZQ8 465 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 NEK5Q6P3R8 708 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 BEND5Q7L4P6 421 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 PROX1Q92786 737 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 C18orf25Q96B23 403 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 SLC10A4Q96EP9 437 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ZNF560Q96MR9 790 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms