RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 UBXN2BQ14CS0 331 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 GPR149Q86SP6 731 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 PIM3Q86V86 326 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 CFAP206Q8IYR0 622 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 KCNJ9Q92806 393 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 RAB7BQ96AH8 199 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 RMDN2Q96LZ7 410 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 IL1RL2Q9HB29 575 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 SNX6Q9UNH7 406 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NPHS1O60500 1241 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 MMP20O60882 483 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 ULK1O75385 1050 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 CBX6O95503 412 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 S1PR4O95977 384 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NQO1P15559 274 aaKnown RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 MAT2AP31153 395 aaKnown RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 CSNK1DP48730 415 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 FRG1Q14331 258 aaKnown RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 GPRC6AQ5T6X5 926 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 IFNEQ86WN2 208 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 GNGT2O14610 69 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 SEC22BO75396 215 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 EPHA3P29320 983 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 CCNFP41002 786 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 ARL4DP49703 201 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 AP2B1P63010 937 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 POU5F2Q8N7G0 328 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 RFWD2Q8NHY2 731 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 WBP2Q969T9 261 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 MAGEB10Q96LZ2 347 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 OR2AG1Q9H205 316 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 LHX3Q9UBR4 397 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NUP205Q92621 2012 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NEMP2A6NFY4 417 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 BHMG1C9JSJ3 638 aaPredicted RBP11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MTX2O75431 263 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ADH1BP00325 375 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 C8GP07360 202 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ACTN3Q08043 901 aaPredicted RBP11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MPP2Q14168 576 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 FUT11Q495W5 492 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ANKRD54Q6NXT1 300 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 YTHDF3Q7Z739 585 aaKnown RBP11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MIER2Q8N344 545 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 KLK6Q92876 244 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 DPY30Q9C005 99 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ACSS2Q9NR19 701 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MKS1Q9NXB0 559 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 AHSPQ9NZD4 102 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 F5P12259 2224 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 GNG14A0A1W2PPG7 69 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MGAT4DA6NG13 374 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MUSKO15146 869 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ADRA1AP35348 466 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 MAGEA3P43357 314 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 LCP2Q13094 533 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 BNIPLQ7Z465 357 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 SNX32Q86XE0 403 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 TMPRSS6Q8IU80 811 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 GALNT13Q8IUC8 556 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 ADGRG2Q8IZP9 1017 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 PGBD5Q8N414 524 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 UBE2E3Q969T4 207 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 CXorf40BQ96DE9 158 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 COG4Q9H9E3 785 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 POPDC3Q9HBV1 291 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 OXSMQ9NWU1 459 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 IL17CQ9P0M4 197 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 HS3ST2Q9Y278 367 aa11.46□□□□□ -0.57
VPS4A-201ENST00000254950 TET1Q8NFU7 2136 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 FFAR3O14843 346 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 NPC1O15118 1278 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 GPR42O15529 346 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 SIN3BO75182 1162 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 ATP1B2P14415 290 aaPredicted RBP11.46□□□□□ -0.58
VPS4A-201ENST00000254950 SUOXP51687 545 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 CLCQ05315 142 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 TNK2Q07912 1038 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 PARP9Q8IXQ6 854 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 KYQ8NBH2 561 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 SCAMP4Q969E2 229 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 Q9H521 79 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 KLC4Q9NSK0 619 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 BTRCQ9Y297 605 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 LRRC37A2A6NM11 1700 aa11.46□□□□□ -0.58
VPS4A-201ENST00000254950 ATP6AP2A0A1C7CYW4 349 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 LDB2O43679 373 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 PEX11AO75192 247 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ATP6AP2O75787 350 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SERPINA6P08185 405 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 IDSP22304 550 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 HSPA7P48741 367 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ACSM2AQ08AH3 577 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 CPSF6Q16630 551 aaKnown RBP eCLIP11.45□□□□□ -0.58
VPS4A-201ENST00000254950 ACSM2BQ68CK6 577 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 SULT1C3Q6IMI6 304 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 HMGB4Q8WW32 186 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 MTG2Q9H4K7 406 aa11.45□□□□□ -0.58
VPS4A-201ENST00000254950 WDR26Q9H7D7 661 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms