RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZYG11BQ9C0D3 744 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 E2F3O00716 465 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 GLP2RO95838 553 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 RBP1P09455 135 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 ALPIP09923 528 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 SLC14A1Q13336 389 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 AQP6Q13520 282 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 SERINC3Q13530 473 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 ZXDCQ2QGD7 858 aaPredicted RBP10.59□□□□□ -0.71
USP28-201ENST00000003302 C10orf120Q5SQS8 335 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 XAF1Q6GPH4 301 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 MSANTD2Q6P1R3 559 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 DLEU7Q6UYE1 221 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 FRS2Q8WU20 508 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 TRIB3Q96RU7 358 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 SYT17Q9BSW7 474 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 NSMCE4AQ9NXX6 385 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 PCTPQ9UKL6 214 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 ERVK-11Q9UQG0 969 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 TRPV2Q9Y5S1 764 aa10.59□□□□□ -0.71
USP28-201ENST00000003302 CLOCKO15516 846 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SLC7A4O43246 635 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 CAPN15O75808 1086 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 CELF2O95319 508 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 PAMP19021 973 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 RENBPP51606 427 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ABRAXAS2Q15018 415 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SF1Q15637 639 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 KLC3Q6P597 504 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ZNF551Q7Z340 670 aaPredicted RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 DCP1BQ8IZD4 617 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 TBC1D15Q8TC07 691 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SLC22A17Q8WUG5 538 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 MTFMTQ96DP5 389 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 AMBRA1Q9C0C7 1298 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TMEM165Q9HC07 324 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 RNF112Q9ULX5 631 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 RHOBTB1O94844 696 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 DIRAS1O95057 198 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 C6orf136Q5SQH8 315 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 FBXO30Q8TB52 745 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ZFP14Q9HCL3 533 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TMCO1Q9UM00 188 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TRANK1O15050 2925 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 CD160O95971 181 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 CTPS1P17812 591 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 EFNA1P20827 205 aaPredicted RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 ACADVLP49748 655 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 MEP1AQ16819 746 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 KIAA0408Q6ZU52 694 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SERINC5Q86VE9 423 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 FBXO39Q8N4B4 442 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 FNDC5Q8NAU1 212 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SEZ6LQ9BYH1 1024 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 NSUN3Q9H649 340 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 PDFQ9HBH1 243 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 CNOT11Q9UKZ1 510 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 PCDHGA8Q9Y5G5 932 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 A0A0U1RQF3 1178 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 FGF10O15520 208 aaPredicted RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 RAMP2O60895 175 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 PENKP01210 267 aaPredicted RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 GSNP06396 782 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 MYF6P23409 242 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 BMXP51813 675 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ATP6V0D1P61421 351 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 FAM189BP81408 668 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 DCTN2Q13561 401 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 SGO1Q5FBB7 561 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 BRMS1LQ5PSV4 323 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 RNF19BQ6ZMZ0 732 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ANKRD46Q86W74 232 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TMEM126BQ8IUX1 230 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 MSRB3Q8IXL7 192 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TEX26Q8N6G2 289 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 TRPV3Q8NET8 790 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 MYLIPQ8WY64 445 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 RMDN1Q96DB5 314 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 SEPT5Q99719 369 aaPredicted RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 PAIP1Q9H074 479 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 EML4Q9HC35 981 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 MRM3Q9HC36 420 aaKnown RBP10.58□□□□□ -0.72
USP28-201ENST00000003302 CATSPERZQ9NTU4 200 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ELOVL2Q9NXB9 296 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 ZNF711Q9Y462 761 aa10.58□□□□□ -0.72
USP28-201ENST00000003302 INSIG1O15503 277 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 MITFO75030 526 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 FUCA1P04066 466 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CYP11A1P05108 521 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ASGR1P07306 291 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PRR35P0CG20 571 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CPT1AP50416 773 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PHC1P78364 1004 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ZXDBP98169 803 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TRAP1Q12931 704 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 DUSP4Q13115 394 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TUSC3Q13454 348 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TCTN1Q2MV58 587 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LCN8Q6JVE9 175 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 BORAQ6PGQ7 559 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms