RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CGNL1Q0VF96 1302 aa14.21□□□□□ -0.13
SCN1A-222ENST00000642141 KIF20BQ96Q89 1820 aa14.21□□□□□ -0.13
SCN1A-222ENST00000642141 ATF5Q9Y2D1 282 aaPredicted RBP14.21□□□□□ -0.13
SCN1A-222ENST00000642141 KAT6BQ8WYB5 2073 aa14.21□□□□□ -0.14
SCN1A-222ENST00000642141 INSRP06213 1382 aa14.21□□□□□ -0.14
SCN1A-222ENST00000642141 TATP17735 454 aaPredicted RBP14.2□□□□□ -0.14
SCN1A-222ENST00000642141 SLC15A2Q16348 729 aa14.2□□□□□ -0.14
SCN1A-222ENST00000642141 LRRC4BQ9NT99 713 aa14.2□□□□□ -0.14
SCN1A-222ENST00000642141 SMG6Q86US8 1419 aaKnown RBP14.2□□□□□ -0.14
SCN1A-222ENST00000642141 FLT4P35916 1363 aa14.2□□□□□ -0.14
SCN1A-222ENST00000642141 NHSQ6T4R5 1651 aa14.19□□□□□ -0.14
SCN1A-222ENST00000642141 FAM208AQ9UK61 1670 aaKnown RBP14.18□□□□□ -0.14
SCN1A-222ENST00000642141 ZNF827Q17R98 1081 aa14.17□□□□□ -0.14
SCN1A-222ENST00000642141 POLKQ9UBT6 870 aa14.17□□□□□ -0.14
SCN1A-222ENST00000642141 BTAF1O14981 1849 aa14.17□□□□□ -0.14
SCN1A-222ENST00000642141 RGPD3A6NKT7 1758 aaPredicted RBP14.17□□□□□ -0.14
SCN1A-222ENST00000642141 RGPD4Q7Z3J3 1758 aa14.17□□□□□ -0.14
SCN1A-222ENST00000642141 WASHC2AQ641Q2 1341 aa14.15□□□□□ -0.15
SCN1A-222ENST00000642141 CYP27B1O15528 508 aa14.14□□□□□ -0.15
SCN1A-222ENST00000642141 PTGER2P43116 358 aa14.14□□□□□ -0.15
SCN1A-222ENST00000642141 MPRIPQ6WCQ1 1025 aa14.14□□□□□ -0.15
SCN1A-222ENST00000642141 EYA1Q99502 592 aa14.14□□□□□ -0.15
SCN1A-222ENST00000642141 NSD2O96028 1365 aa14.13□□□□□ -0.15
SCN1A-222ENST00000642141 KIF24Q5T7B8 1368 aa14.13□□□□□ -0.15
SCN1A-222ENST00000642141 EIF4A2Q14240 407 aaKnown RBP14.13□□□□□ -0.15
SCN1A-222ENST00000642141 MORC1Q86VD1 984 aa14.13□□□□□ -0.15
SCN1A-222ENST00000642141 PCDH11XQ9BZA7 1347 aa14.13□□□□□ -0.15
SCN1A-222ENST00000642141 PCDH11YQ9BZA8 1340 aa14.13□□□□□ -0.15
SCN1A-222ENST00000642141 CNGB1Q14028 1251 aaPredicted RBP14.12□□□□□ -0.15
SCN1A-222ENST00000642141 TFCP2L1Q9NZI6 479 aa14.12□□□□□ -0.15
SCN1A-222ENST00000642141 CCNL1Q9UK58 526 aaPredicted RBP14.12□□□□□ -0.15
SCN1A-222ENST00000642141 DOT1LQ8TEK3 1739 aa14.12□□□□□ -0.15
SCN1A-222ENST00000642141 SHANK3Q9BYB0 1731 aa14.12□□□□□ -0.15
SCN1A-222ENST00000642141 CASZ1Q86V15 1759 aa14.11□□□□□ -0.15
SCN1A-222ENST00000642141 SLC27A3Q5K4L6 730 aa14.11□□□□□ -0.15
SCN1A-222ENST00000642141 AKT1S1Q96B36 256 aa14.11□□□□□ -0.15
SCN1A-222ENST00000642141 KNSTRNQ9Y448 316 aa14.11□□□□□ -0.15
SCN1A-222ENST00000642141 MSH5O43196 834 aa14.1□□□□□ -0.15
SCN1A-222ENST00000642141 MTFR1LQ9H019 292 aa14.1□□□□□ -0.15
SCN1A-222ENST00000642141 SPG7Q9UQ90 795 aa14.1□□□□□ -0.15
SCN1A-222ENST00000642141 MAP2P11137 1827 aaKnown RBP14.1□□□□□ -0.15
SCN1A-222ENST00000642141 KIF7Q2M1P5 1343 aa14.1□□□□□ -0.15
SCN1A-222ENST00000642141 PIGBQ92521 554 aa14.08□□□□□ -0.16
SCN1A-222ENST00000642141 FHDC1Q9C0D6 1143 aaPredicted RBP14.08□□□□□ -0.16
SCN1A-222ENST00000642141 PNPLA7Q6ZV29 1317 aa14.08□□□□□ -0.16
SCN1A-222ENST00000642141 PAPPAQ13219 1627 aa14.08□□□□□ -0.16
SCN1A-222ENST00000642141 KLHL34Q8N239 644 aa14.07□□□□□ -0.16
SCN1A-222ENST00000642141 SMIM5Q71RC9 77 aa14.06□□□□□ -0.16
SCN1A-222ENST00000642141 AEBP1Q8IUX7 1158 aa14.06□□□□□ -0.16
SCN1A-222ENST00000642141 ARXQ96QS3 562 aa14.06□□□□□ -0.16
SCN1A-222ENST00000642141 SGIP1Q9BQI5 828 aa14.06□□□□□ -0.16
SCN1A-222ENST00000642141 DCAF8L1A6NGE4 600 aa14.05□□□□□ -0.16
SCN1A-222ENST00000642141 PHKG2P15735 406 aa14.05□□□□□ -0.16
SCN1A-222ENST00000642141 CC2D1BQ5T0F9 858 aaKnown RBP14.05□□□□□ -0.16
SCN1A-222ENST00000642141 SYT17Q9BSW7 474 aa14.05□□□□□ -0.16
SCN1A-222ENST00000642141 PALLDQ8WX93 1383 aa14.05□□□□□ -0.16
SCN1A-222ENST00000642141 ANKRD26Q9UPS8 1709 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 NKX1-1Q15270 411 aaPredicted RBP14.04□□□□□ -0.16
SCN1A-222ENST00000642141 AMER1Q5JTC6 1135 aaPredicted RBP14.04□□□□□ -0.16
SCN1A-222ENST00000642141 MSL1Q68DK7 614 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 IFNL2Q8IZJ0 200 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 TMOD3Q9NYL9 352 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 ASAP1Q9ULH1 1129 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 NCAPD2Q15021 1401 aa14.04□□□□□ -0.16
SCN1A-222ENST00000642141 COL23A1Q86Y22 540 aaPredicted RBP14.03□□□□□ -0.16
SCN1A-222ENST00000642141 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.03□□□□□ -0.167e-8■■■■□ 19.6
SCN1A-222ENST00000642141 IGSF1Q8N6C5 1336 aa14.03□□□□□ -0.16
SCN1A-222ENST00000642141 SULT6B1Q6IMI4 303 aa14.02□□□□□ -0.17
SCN1A-222ENST00000642141 SMARCC1Q92922 1105 aaPredicted RBP14.02□□□□□ -0.17
SCN1A-222ENST00000642141 LY75O60449 1722 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 TOGARAM1Q9Y4F4 1720 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 PHF14O94880 888 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 YY1P25490 414 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 POLD1P28340 1107 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 MTHFSP49914 203 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 PLEKHO1Q53GL0 409 aaPredicted RBP14.01□□□□□ -0.17
SCN1A-222ENST00000642141 ZNF530Q6P9A1 599 aaPredicted RBP14.01□□□□□ -0.17
SCN1A-222ENST00000642141 AMIGO3Q86WK7 504 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 SLC16A10Q8TF71 515 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 PKD1L3Q7Z443 1732 aa14.01□□□□□ -0.17
SCN1A-222ENST00000642141 PER1O15534 1290 aaPredicted RBP14□□□□□ -0.17
SCN1A-222ENST00000642141 IL13P35225 146 aa14□□□□□ -0.17
SCN1A-222ENST00000642141 AK7Q96M32 723 aa14□□□□□ -0.17
SCN1A-222ENST00000642141 LOC102724428A0A0B4J2F2 783 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 SIK1P57059 783 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
SCN1A-222ENST00000642141 LINC00116Q8NCU8 138 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 ATG3Q9NT62 314 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 ITGB4P16144 1822 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 TUBGCP6Q96RT7 1819 aa13.99□□□□□ -0.17
SCN1A-222ENST00000642141 HMOX1P09601 288 aa13.98□□□□□ -0.17
SCN1A-222ENST00000642141 ATP6V1AP38606 617 aa13.98□□□□□ -0.17
SCN1A-222ENST00000642141 ITPK1Q13572 414 aa13.98□□□□□ -0.17
SCN1A-222ENST00000642141 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
SCN1A-222ENST00000642141 CABP4P57796 275 aa13.97□□□□□ -0.17
SCN1A-222ENST00000642141 C1orf141Q5JVX7 400 aa13.97□□□□□ -0.17
SCN1A-222ENST00000642141 NLGN2Q8NFZ4 835 aa13.97□□□□□ -0.17
SCN1A-222ENST00000642141 DCAF5Q96JK2 942 aa13.97□□□□□ -0.17
SCN1A-222ENST00000642141 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.96□□□□□ -0.17
SCN1A-222ENST00000642141 GPR162Q16538 588 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms