RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 KIF3CO14782 793 aa23.48■■□□□ 1.35
CLN3-264ENST00000637985 MON2Q7Z3U7 1717 aa23.47■■□□□ 1.35
CLN3-264ENST00000637985 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.46■■□□□ 1.35
CLN3-264ENST00000637985 DOT1LQ8TEK3 1739 aa23.46■■□□□ 1.35
CLN3-264ENST00000637985 APLP1P51693 650 aa23.45■■□□□ 1.34
CLN3-264ENST00000637985 NME9Q86XW9 330 aa23.45■■□□□ 1.34
CLN3-264ENST00000637985 DNAJC5GQ8N7S2 189 aa23.45■■□□□ 1.34
CLN3-264ENST00000637985 SBNO2Q9Y2G9 1366 aa23.41■■□□□ 1.34
CLN3-264ENST00000637985 IP6K1Q92551 441 aa23.4■■□□□ 1.34
CLN3-264ENST00000637985 USP47Q96K76 1375 aa23.4■■□□□ 1.34
CLN3-264ENST00000637985 FAM208AQ9UK61 1670 aaKnown RBP23.39■■□□□ 1.34
CLN3-264ENST00000637985 FLAD1Q8NFF5 587 aa23.39■■□□□ 1.33
CLN3-264ENST00000637985 IGSF1Q8N6C5 1336 aa23.38■■□□□ 1.33
CLN3-264ENST00000637985 CD163L1Q9NR16 1453 aa23.38■■□□□ 1.33
CLN3-264ENST00000637985 ZCRB1Q8TBF4 217 aaKnown RBP23.37■■□□□ 1.33
CLN3-264ENST00000637985 C5P01031 1676 aa23.36■■□□□ 1.33
CLN3-264ENST00000637985 LTV1Q96GA3 475 aaPredicted RBP23.36■■□□□ 1.33
CLN3-264ENST00000637985 TOMM70O94826 608 aa23.35■■□□□ 1.33
CLN3-264ENST00000637985 HMGB2P26583 209 aaKnown RBP23.34■■□□□ 1.33
CLN3-264ENST00000637985 WWC3Q9ULE0 1092 aa23.34■■□□□ 1.33
CLN3-264ENST00000637985 TAF1LQ8IZX4 1826 aa23.32■■□□□ 1.32
CLN3-264ENST00000637985 MEGF6O75095 1541 aa23.32■■□□□ 1.32
CLN3-264ENST00000637985 CICQ96RK0 1608 aaPredicted RBP23.31■■□□□ 1.32
CLN3-264ENST00000637985 COL13A1Q5TAT6 717 aaPredicted RBP23.31■■□□□ 1.32
CLN3-264ENST00000637985 L3MBTL2Q969R5 705 aa23.3■■□□□ 1.32
CLN3-264ENST00000637985 EDC4Q6P2E9 1401 aaKnown RBP23.3■■□□□ 1.32
CLN3-264ENST00000637985 RGPD2P0DJD1 1756 aa23.28■■□□□ 1.32
CLN3-264ENST00000637985 HDGFL2Q7Z4V5 671 aaPredicted RBP23.28■■□□□ 1.32
CLN3-264ENST00000637985 AMIGO3Q86WK7 504 aa23.28■■□□□ 1.32
CLN3-264ENST00000637985 ROCK2O75116 1388 aaKnown RBP23.27■■□□□ 1.32
CLN3-264ENST00000637985 SLC12A5Q9H2X9 1139 aa23.27■■□□□ 1.32
CLN3-264ENST00000637985 TOGARAM1Q9Y4F4 1720 aa23.27■■□□□ 1.32
CLN3-264ENST00000637985 PALLDQ8WX93 1383 aa23.27■■□□□ 1.31
CLN3-264ENST00000637985 C4BP0C0L5 1744 aa23.26■■□□□ 1.31
CLN3-264ENST00000637985 WDR90Q96KV7 1748 aa23.26■■□□□ 1.31
CLN3-264ENST00000637985 HOXC9P31274 260 aa23.26■■□□□ 1.31
CLN3-264ENST00000637985 JMYQ8N9B5 988 aa23.26■■□□□ 1.31
CLN3-264ENST00000637985 TMC1Q8TDI8 760 aa23.26■■□□□ 1.31
CLN3-264ENST00000637985 CGNL1Q0VF96 1302 aa23.25■■□□□ 1.31
CLN3-264ENST00000637985 MAP3K19Q56UN5 1328 aa23.25■■□□□ 1.31
CLN3-264ENST00000637985 KLRG1Q96E93 195 aa23.24■■□□□ 1.31
CLN3-264ENST00000637985 AK7Q96M32 723 aa23.24■■□□□ 1.31
CLN3-264ENST00000637985 UBR3Q6ZT12 1888 aa23.24■■□□□ 1.31
CLN3-264ENST00000637985 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.23■■□□□ 1.31
CLN3-264ENST00000637985 CAPN15O75808 1086 aa23.23■■□□□ 1.31
CLN3-264ENST00000637985 NMRK2Q9NPI5 230 aa23.23■■□□□ 1.31
CLN3-264ENST00000637985 PCNTO95613 3336 aa23.22■■□□□ 1.31
CLN3-264ENST00000637985 SMIM5Q71RC9 77 aa23.22■■□□□ 1.31
CLN3-264ENST00000637985 TERF2IPQ9NYB0 399 aa23.22■■□□□ 1.31
CLN3-264ENST00000637985 A0A1W2PP64 1363 aa23.22■■□□□ 1.31
CLN3-264ENST00000637985 PHF14O94880 888 aa23.21■■□□□ 1.31
CLN3-264ENST00000637985 AMPHP49418 695 aa23.21■■□□□ 1.31
CLN3-264ENST00000637985 PRELPP51888 382 aa23.21■■□□□ 1.31
CLN3-264ENST00000637985 NBPF6Q5VWK0 638 aa23.21■■□□□ 1.31
CLN3-264ENST00000637985 RBM46Q8TBY0 533 aaKnown RBP23.21■■□□□ 1.31
CLN3-264ENST00000637985 NBPF4Q96M43 638 aa23.21■■□□□ 1.31
CLN3-264ENST00000637985 NSD3Q9BZ95 1437 aa23.2■■□□□ 1.3
CLN3-264ENST00000637985 MPRIPQ6WCQ1 1025 aa23.2■■□□□ 1.3
CLN3-264ENST00000637985 FBLN1P23142 703 aa23.19■■□□□ 1.3
CLN3-264ENST00000637985 SSFA2P28290 1259 aa23.19■■□□□ 1.3
CLN3-264ENST00000637985 HTRA3P83110 453 aa23.19■■□□□ 1.3
CLN3-264ENST00000637985 TNS4Q8IZW8 715 aa23.18■■□□□ 1.3
CLN3-264ENST00000637985 RAPGEF4Q8WZA2 1011 aa23.18■■□□□ 1.3
CLN3-264ENST00000637985 SMARCC1Q92922 1105 aaPredicted RBP23.18■■□□□ 1.3
CLN3-264ENST00000637985 PXDNLA1KZ92 1463 aa23.17■■□□□ 1.3
CLN3-264ENST00000637985 KIF13BQ9NQT8 1826 aa23.17■■□□□ 1.3
CLN3-264ENST00000637985 KIAA1551Q9HCM1 1747 aa23.16■■□□□ 1.3
CLN3-264ENST00000637985 PCDH11XQ9BZA7 1347 aa23.16■■□□□ 1.3
CLN3-264ENST00000637985 PCDH11YQ9BZA8 1340 aa23.16■■□□□ 1.3
CLN3-264ENST00000637985 USHBP1Q8N6Y0 703 aa23.16■■□□□ 1.3
CLN3-264ENST00000637985 COG3Q96JB2 828 aa23.16■■□□□ 1.3
CLN3-264ENST00000637985 TATP17735 454 aaPredicted RBP23.14■■□□□ 1.29
CLN3-264ENST00000637985 TGFB2P61812 414 aa23.14■■□□□ 1.29
CLN3-264ENST00000637985 FSTL1Q12841 308 aa23.14■■□□□ 1.29
CLN3-264ENST00000637985 BCS1LQ9Y276 419 aa23.14■■□□□ 1.29
CLN3-264ENST00000637985 ITGB4P16144 1822 aa23.14■■□□□ 1.29
CLN3-264ENST00000637985 RTL1A6NKG5 1358 aa23.14■■□□□ 1.29
CLN3-264ENST00000637985 ARHGAP27Q6ZUM4 889 aa23.13■■□□□ 1.29
CLN3-264ENST00000637985 MAP2P11137 1827 aaKnown RBP23.12■■□□□ 1.29
CLN3-264ENST00000637985 N4BP2Q86UW6 1770 aaPredicted RBP23.12■■□□□ 1.29
CLN3-264ENST00000637985 CYP27B1O15528 508 aa23.12■■□□□ 1.29
CLN3-264ENST00000637985 MMP10P09238 476 aa23.12■■□□□ 1.29
CLN3-264ENST00000637985 LINC00116Q8NCU8 138 aa23.12■■□□□ 1.29
CLN3-264ENST00000637985 PUS7Q96PZ0 661 aaKnown RBP23.12■■□□□ 1.29
CLN3-264ENST00000637985 A0A0G2JLW4 131 aa23.11■■□□□ 1.29
CLN3-264ENST00000637985 C16orf71Q8IYS4 520 aaPredicted RBP23.11■■□□□ 1.29
CLN3-264ENST00000637985 PIGBQ92521 554 aa23.11■■□□□ 1.29
CLN3-264ENST00000637985 LOC102724428A0A0B4J2F2 783 aa23.09■■□□□ 1.29
CLN3-264ENST00000637985 SIK1P57059 783 aa23.09■■□□□ 1.29
CLN3-264ENST00000637985 RRS1Q15050 365 aaKnown RBP23.08■■□□□ 1.29
CLN3-264ENST00000637985 PLEKHG2Q9H7P9 1386 aa23.07■■□□□ 1.28
CLN3-264ENST00000637985 GNPATO15228 680 aa23.07■■□□□ 1.28
CLN3-264ENST00000637985 C9orf131Q5VYM1 1079 aa23.07■■□□□ 1.28
CLN3-264ENST00000637985 C10orf71Q711Q0 1435 aa23.07■■□□□ 1.28
CLN3-264ENST00000637985 SMG6Q86US8 1419 aaKnown RBP23.07■■□□□ 1.28
CLN3-264ENST00000637985 SIN3AQ96ST3 1273 aa23.06■■□□□ 1.28
CLN3-264ENST00000637985 BRCA1P38398 1863 aaKnown RBP23.06■■□□□ 1.28
CLN3-264ENST00000637985 FCHSD2O94868 740 aa23.05■■□□□ 1.28
CLN3-264ENST00000637985 DPEP1P16444 411 aa23.05■■□□□ 1.28
CLN3-264ENST00000637985 ITPK1Q13572 414 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms