RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KTN1Q86UP2 1357 aaKnown RBP21.05■□□□□ 0.96
CLN3-249ENST00000636685 DNAJC5GQ8N7S2 189 aa21.04■□□□□ 0.96
CLN3-249ENST00000636685 MON2Q7Z3U7 1717 aa21.04■□□□□ 0.96
CLN3-249ENST00000636685 ANKRD36BQ8N2N9 1353 aa21.03■□□□□ 0.96
CLN3-249ENST00000636685 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-249ENST00000636685 USP54Q70EL1 1684 aa21.02■□□□□ 0.96
CLN3-249ENST00000636685 USP31Q70CQ4 1352 aa21.01■□□□□ 0.95
CLN3-249ENST00000636685 CAPN15O75808 1086 aa21■□□□□ 0.95
CLN3-249ENST00000636685 NME9Q86XW9 330 aa21■□□□□ 0.95
CLN3-249ENST00000636685 IGSF1Q8N6C5 1336 aa20.99■□□□□ 0.95
CLN3-249ENST00000636685 C5P01031 1676 aa20.99■□□□□ 0.95
CLN3-249ENST00000636685 COL13A1Q5TAT6 717 aaPredicted RBP20.98■□□□□ 0.95
CLN3-249ENST00000636685 LTV1Q96GA3 475 aaPredicted RBP20.97■□□□□ 0.95
CLN3-249ENST00000636685 TAF1LQ8IZX4 1826 aa20.96■□□□□ 0.95
CLN3-249ENST00000636685 FAM208AQ9UK61 1670 aaKnown RBP20.96■□□□□ 0.95
CLN3-249ENST00000636685 USP47Q96K76 1375 aa20.95■□□□□ 0.94
CLN3-249ENST00000636685 WDR90Q96KV7 1748 aa20.95■□□□□ 0.94
CLN3-249ENST00000636685 RGPD2P0DJD1 1756 aa20.95■□□□□ 0.94
CLN3-249ENST00000636685 TOMM70O94826 608 aa20.93■□□□□ 0.94
CLN3-249ENST00000636685 FLAD1Q8NFF5 587 aa20.92■□□□□ 0.94
CLN3-249ENST00000636685 ZCRB1Q8TBF4 217 aaKnown RBP20.92■□□□□ 0.94
CLN3-249ENST00000636685 IP6K1Q92551 441 aa20.92■□□□□ 0.94
CLN3-249ENST00000636685 SBNO2Q9Y2G9 1366 aa20.92■□□□□ 0.94
CLN3-249ENST00000636685 CICQ96RK0 1608 aaPredicted RBP20.9■□□□□ 0.94
CLN3-249ENST00000636685 CD163L1Q9NR16 1453 aa20.9■□□□□ 0.94
CLN3-249ENST00000636685 HTRA3P83110 453 aa20.9■□□□□ 0.94
CLN3-249ENST00000636685 MEGF6O75095 1541 aa20.89■□□□□ 0.94
CLN3-249ENST00000636685 AMIGO3Q86WK7 504 aa20.89■□□□□ 0.93
CLN3-249ENST00000636685 TOGARAM1Q9Y4F4 1720 aa20.89■□□□□ 0.93
CLN3-249ENST00000636685 SMIM5Q71RC9 77 aa20.88■□□□□ 0.93
CLN3-249ENST00000636685 UBR3Q6ZT12 1888 aa20.88■□□□□ 0.93
CLN3-249ENST00000636685 C4BP0C0L5 1744 aa20.87■□□□□ 0.93
CLN3-249ENST00000636685 TNS4Q8IZW8 715 aa20.87■□□□□ 0.93
CLN3-249ENST00000636685 KLRG1Q96E93 195 aa20.87■□□□□ 0.93
CLN3-249ENST00000636685 NMRK2Q9NPI5 230 aa20.87■□□□□ 0.93
CLN3-249ENST00000636685 PHF14O94880 888 aa20.85■□□□□ 0.93
CLN3-249ENST00000636685 PRELPP51888 382 aa20.85■□□□□ 0.93
CLN3-249ENST00000636685 JMYQ8N9B5 988 aa20.85■□□□□ 0.93
CLN3-249ENST00000636685 PALLDQ8WX93 1383 aa20.85■□□□□ 0.93
CLN3-249ENST00000636685 PCNTO95613 3336 aa20.84■□□□□ 0.93
CLN3-249ENST00000636685 N4BP2Q86UW6 1770 aaPredicted RBP20.83■□□□□ 0.93
CLN3-249ENST00000636685 TMC1Q8TDI8 760 aa20.83■□□□□ 0.93
CLN3-249ENST00000636685 AK7Q96M32 723 aa20.83■□□□□ 0.93
CLN3-249ENST00000636685 EDC4Q6P2E9 1401 aaKnown RBP20.82■□□□□ 0.92
CLN3-249ENST00000636685 KIAA1551Q9HCM1 1747 aa20.81■□□□□ 0.92
CLN3-249ENST00000636685 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.81■□□□□ 0.92
CLN3-249ENST00000636685 HOXC9P31274 260 aa20.81■□□□□ 0.92
CLN3-249ENST00000636685 HDGFL2Q7Z4V5 671 aaPredicted RBP20.81■□□□□ 0.92
CLN3-249ENST00000636685 RBM46Q8TBY0 533 aaKnown RBP20.81■□□□□ 0.92
CLN3-249ENST00000636685 FBLN1P23142 703 aa20.8■□□□□ 0.92
CLN3-249ENST00000636685 L3MBTL2Q969R5 705 aa20.8■□□□□ 0.92
CLN3-249ENST00000636685 SLC12A5Q9H2X9 1139 aa20.8■□□□□ 0.92
CLN3-249ENST00000636685 ITGB4P16144 1822 aa20.8■□□□□ 0.92
CLN3-249ENST00000636685 MAP3K19Q56UN5 1328 aa20.79■□□□□ 0.92
CLN3-249ENST00000636685 KIF13BQ9NQT8 1826 aa20.79■□□□□ 0.92
CLN3-249ENST00000636685 HMGB2P26583 209 aaKnown RBP20.79■□□□□ 0.92
CLN3-249ENST00000636685 MPRIPQ6WCQ1 1025 aa20.79■□□□□ 0.92
CLN3-249ENST00000636685 USHBP1Q8N6Y0 703 aa20.79■□□□□ 0.92
CLN3-249ENST00000636685 ROCK2O75116 1388 aaKnown RBP20.79■□□□□ 0.92
CLN3-249ENST00000636685 PXDNLA1KZ92 1463 aa20.78■□□□□ 0.92
CLN3-249ENST00000636685 AMPHP49418 695 aa20.78■□□□□ 0.92
CLN3-249ENST00000636685 BCS1LQ9Y276 419 aa20.78■□□□□ 0.92
CLN3-249ENST00000636685 ARHGAP27Q6ZUM4 889 aa20.77■□□□□ 0.92
CLN3-249ENST00000636685 A0A1W2PP64 1363 aa20.76■□□□□ 0.91
CLN3-249ENST00000636685 NBPF6Q5VWK0 638 aa20.76■□□□□ 0.91
CLN3-249ENST00000636685 C16orf71Q8IYS4 520 aaPredicted RBP20.76■□□□□ 0.91
CLN3-249ENST00000636685 NBPF4Q96M43 638 aa20.76■□□□□ 0.91
CLN3-249ENST00000636685 NSD3Q9BZ95 1437 aa20.75■□□□□ 0.91
CLN3-249ENST00000636685 MAP2P11137 1827 aaKnown RBP20.74■□□□□ 0.91
CLN3-249ENST00000636685 A0A0G2JLW4 131 aa20.74■□□□□ 0.91
CLN3-249ENST00000636685 SSFA2P28290 1259 aa20.74■□□□□ 0.91
CLN3-249ENST00000636685 FSTL1Q12841 308 aa20.74■□□□□ 0.91
CLN3-249ENST00000636685 RAPGEF4Q8WZA2 1011 aa20.74■□□□□ 0.91
CLN3-249ENST00000636685 CGNL1Q0VF96 1302 aa20.74■□□□□ 0.91
CLN3-249ENST00000636685 MMP10P09238 476 aa20.73■□□□□ 0.91
CLN3-249ENST00000636685 LINC00116Q8NCU8 138 aa20.73■□□□□ 0.91
CLN3-249ENST00000636685 SMARCC1Q92922 1105 aaPredicted RBP20.73■□□□□ 0.91
CLN3-249ENST00000636685 TERF2IPQ9NYB0 399 aa20.73■□□□□ 0.91
CLN3-249ENST00000636685 TATP17735 454 aaPredicted RBP20.72■□□□□ 0.91
CLN3-249ENST00000636685 BRCA1P38398 1863 aaKnown RBP20.72■□□□□ 0.91
CLN3-249ENST00000636685 PCDH11XQ9BZA7 1347 aa20.72■□□□□ 0.91
CLN3-249ENST00000636685 PCDH11YQ9BZA8 1340 aa20.72■□□□□ 0.91
CLN3-249ENST00000636685 PKD1L3Q7Z443 1732 aa20.71■□□□□ 0.91
CLN3-249ENST00000636685 C9orf131Q5VYM1 1079 aa20.71■□□□□ 0.91
CLN3-249ENST00000636685 COG3Q96JB2 828 aa20.71■□□□□ 0.91
CLN3-249ENST00000636685 KCPQ6ZWJ8 1503 aa20.7■□□□□ 0.9
CLN3-249ENST00000636685 TGFB2P61812 414 aa20.7■□□□□ 0.9
CLN3-249ENST00000636685 CYP27B1O15528 508 aa20.69■□□□□ 0.9
CLN3-249ENST00000636685 FCHSD2O94868 740 aa20.69■□□□□ 0.9
CLN3-249ENST00000636685 PIGBQ92521 554 aa20.69■□□□□ 0.9
CLN3-249ENST00000636685 GNPATO15228 680 aa20.68■□□□□ 0.9
CLN3-249ENST00000636685 DPEP1P16444 411 aa20.68■□□□□ 0.9
CLN3-249ENST00000636685 RRS1Q15050 365 aaKnown RBP20.68■□□□□ 0.9
CLN3-249ENST00000636685 ARFGEF1Q9Y6D6 1849 aa20.68■□□□□ 0.9
CLN3-249ENST00000636685 LOC102724428A0A0B4J2F2 783 aa20.67■□□□□ 0.9
CLN3-249ENST00000636685 HSPA1AP0DMV8 641 aaKnown RBP20.67■□□□□ 0.9
CLN3-249ENST00000636685 HSPA1BP0DMV9 641 aaKnown RBP20.67■□□□□ 0.9
CLN3-249ENST00000636685 SIK1P57059 783 aa20.67■□□□□ 0.9
CLN3-249ENST00000636685 RRAGCQ9HB90 399 aa20.67■□□□□ 0.9
CLN3-249ENST00000636685 RTL1A6NKG5 1358 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms