RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FSD2A1L4K1 749 aa15.89■□□□□ 0.13
LINC00540-203ENST00000631321 HSP90AB2PQ58FF8 381 aa15.89■□□□□ 0.13
LINC00540-203ENST00000631321 GSPT1P15170 499 aaKnown RBP15.89■□□□□ 0.13
LINC00540-203ENST00000631321 MCM10Q7L590 875 aa15.89■□□□□ 0.13
LINC00540-203ENST00000631321 DDX11L8A8MPP1 907 aa15.88■□□□□ 0.13
LINC00540-203ENST00000631321 KRT24Q2M2I5 525 aa15.88■□□□□ 0.13
LINC00540-203ENST00000631321 RTL1A6NKG5 1358 aa15.87■□□□□ 0.13
LINC00540-203ENST00000631321 TRAK2O60296 914 aa15.87■□□□□ 0.13
LINC00540-203ENST00000631321 TTC22Q5TAA0 569 aa15.87■□□□□ 0.13
LINC00540-203ENST00000631321 CEP85Q6P2H3 762 aa15.87■□□□□ 0.13
LINC00540-203ENST00000631321 HSP90AB1P08238 724 aaKnown RBP15.87■□□□□ 0.13
LINC00540-203ENST00000631321 KDRP35968 1356 aa15.86■□□□□ 0.13
LINC00540-203ENST00000631321 SBNO1A3KN83 1393 aa15.86■□□□□ 0.13
LINC00540-203ENST00000631321 MAP3K19Q56UN5 1328 aa15.86■□□□□ 0.13
LINC00540-203ENST00000631321 MSH6P52701 1360 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 ARHGAP23Q9P227 1491 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 K7ELQ4 463 aaPredicted RBP15.85■□□□□ 0.13
LINC00540-203ENST00000631321 RAB3GAP1Q15042 981 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 FAM43AQ8N2R8 423 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 FLT4P35916 1363 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 SLIT1O75093 1534 aa15.85■□□□□ 0.13
LINC00540-203ENST00000631321 GOLGA6L3A6NEY3 463 aa15.84■□□□□ 0.13
LINC00540-203ENST00000631321 CD2BP2O95400 341 aaKnown RBP15.84■□□□□ 0.13
LINC00540-203ENST00000631321 TNPO1Q92973 898 aaKnown RBP15.84■□□□□ 0.13
LINC00540-203ENST00000631321 TBX22Q9Y458 520 aa15.84■□□□□ 0.13
LINC00540-203ENST00000631321 IGSF1Q8N6C5 1336 aa15.83■□□□□ 0.12
LINC00540-203ENST00000631321 NUTM2FA1L443 756 aa15.83■□□□□ 0.12
LINC00540-203ENST00000631321 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
LINC00540-203ENST00000631321 MEIS3Q99687 375 aa15.83■□□□□ 0.12
LINC00540-203ENST00000631321 EID1Q9Y6B2 187 aa15.83■□□□□ 0.12
LINC00540-203ENST00000631321 AMOTL2Q9Y2J4 779 aa15.82■□□□□ 0.12
LINC00540-203ENST00000631321 SLC4A2P04920 1241 aa15.82■□□□□ 0.12
LINC00540-203ENST00000631321 XRCC6P12956 609 aaKnown RBP eCLIP15.82■□□□□ 0.12
LINC00540-203ENST00000631321 C16orf71Q8IYS4 520 aaPredicted RBP15.82■□□□□ 0.12
LINC00540-203ENST00000631321 SLC26A8Q96RN1 970 aa15.82■□□□□ 0.12
LINC00540-203ENST00000631321 HTATSF1O43719 755 aaKnown RBP15.81■□□□□ 0.12
LINC00540-203ENST00000631321 PTMSP20962 102 aa15.81■□□□□ 0.12
LINC00540-203ENST00000631321 RABEP1Q15276 862 aa15.81■□□□□ 0.12
LINC00540-203ENST00000631321 GBP4Q96PP9 640 aa15.81■□□□□ 0.12
LINC00540-203ENST00000631321 RBM42Q9BTD8 480 aaKnown RBP15.81■□□□□ 0.12
LINC00540-203ENST00000631321 ISY1Q9ULR0 285 aaKnown RBP15.81■□□□□ 0.12
LINC00540-203ENST00000631321 FMN2Q9NZ56 1722 aa15.81■□□□□ 0.12
LINC00540-203ENST00000631321 GAS2L2Q8NHY3 880 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 RTF1Q92541 710 aaKnown RBP15.8■□□□□ 0.12
LINC00540-203ENST00000631321 USP26Q9BXU7 913 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 TSPYL4Q9UJ04 414 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 FOXO3O43524 673 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 CCT4P50991 539 aaKnown RBP15.8■□□□□ 0.12
LINC00540-203ENST00000631321 CLEC17AQ6ZS10 378 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 DIP2AQ14689 1571 aa15.8■□□□□ 0.12
LINC00540-203ENST00000631321 HMMRO75330 724 aa15.79■□□□□ 0.12
LINC00540-203ENST00000631321 OTUD7AQ8TE49 926 aaPredicted RBP15.79■□□□□ 0.12
LINC00540-203ENST00000631321 EYA1Q99502 592 aa15.79■□□□□ 0.12
LINC00540-203ENST00000631321 CEP170BQ9Y4F5 1589 aaPredicted RBP15.79■□□□□ 0.12
LINC00540-203ENST00000631321 GZF1Q9H116 711 aaPredicted RBP15.79■□□□□ 0.12
LINC00540-203ENST00000631321 SDSP20132 328 aa15.78■□□□□ 0.12
LINC00540-203ENST00000631321 OSBPL3Q9H4L5 887 aa15.78■□□□□ 0.12
LINC00540-203ENST00000631321 LRRC37A3O60309 1634 aa15.78■□□□□ 0.12
LINC00540-203ENST00000631321 ANKARQ7Z5J8 1434 aa15.78■□□□□ 0.12
LINC00540-203ENST00000631321 SKOR2Q2VWA4 1001 aaPredicted RBP15.78■□□□□ 0.12
LINC00540-203ENST00000631321 MIS18AQ9NYP9 233 aa15.78■□□□□ 0.12
LINC00540-203ENST00000631321 MRE11P49959 708 aa15.77■□□□□ 0.12
LINC00540-203ENST00000631321 G2E3Q7L622 706 aa15.77■□□□□ 0.12
LINC00540-203ENST00000631321 NGDNQ8NEJ9 315 aaKnown RBP15.77■□□□□ 0.12
LINC00540-203ENST00000631321 PIK3C2AO00443 1686 aa15.77■□□□□ 0.12
LINC00540-203ENST00000631321 RIMS1Q86UR5 1692 aaKnown RBP15.77■□□□□ 0.12
LINC00540-203ENST00000631321 SOS1Q07889 1333 aaPredicted RBP15.77■□□□□ 0.12
LINC00540-203ENST00000631321 SOX12O15370 315 aa15.77■□□□□ 0.11
LINC00540-203ENST00000631321 HSP90AA1P07900 732 aaKnown RBP15.77■□□□□ 0.11
LINC00540-203ENST00000631321 SMARCA5O60264 1052 aaPredicted RBP15.76■□□□□ 0.11
LINC00540-203ENST00000631321 AMPHP49418 695 aa15.76■□□□□ 0.11
LINC00540-203ENST00000631321 CASC1Q6TDU7 716 aa15.76■□□□□ 0.11
LINC00540-203ENST00000631321 CEBPAP49715 358 aaPredicted RBP15.76■□□□□ 0.11
LINC00540-203ENST00000631321 NWD1Q149M9 1564 aa15.75■□□□□ 0.11
LINC00540-203ENST00000631321 BABAM1Q9NWV8 329 aa15.75■□□□□ 0.11
LINC00540-203ENST00000631321 XRN1Q8IZH2 1706 aaKnown RBP15.75■□□□□ 0.11
LINC00540-203ENST00000631321 USP54Q70EL1 1684 aa15.74■□□□□ 0.11
LINC00540-203ENST00000631321 F6X3S4 739 aa15.74■□□□□ 0.11
LINC00540-203ENST00000631321 GNAI2P04899 355 aa15.74■□□□□ 0.11
LINC00540-203ENST00000631321 REC8O95072 547 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 STK31Q9BXU1 1019 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 FOXD4L1Q9NU39 408 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 SALL3Q9BXA9 1300 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 GNAT3A8MTJ3 354 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 SSFA2P28290 1259 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 HOXC9P31274 260 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 PDE1AP54750 535 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 CCDC30Q5VVM6 783 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 SLC4A10Q6U841 1118 aa15.73■□□□□ 0.11
LINC00540-203ENST00000631321 THEMISQ8N1K5 641 aaPredicted RBP15.72■□□□□ 0.11
LINC00540-203ENST00000631321 GRPEL1Q9HAV7 217 aa15.72■□□□□ 0.11
LINC00540-203ENST00000631321 GNAI3P08754 354 aa15.72■□□□□ 0.11
LINC00540-203ENST00000631321 FLIIQ13045 1269 aa15.72■□□□□ 0.11
LINC00540-203ENST00000631321 PANK2Q9BZ23 570 aa15.72■□□□□ 0.11
LINC00540-203ENST00000631321 ERC2O15083 957 aa15.71■□□□□ 0.11
LINC00540-203ENST00000631321 CYP2E1P05181 493 aaPredicted RBP15.71■□□□□ 0.11
LINC00540-203ENST00000631321 NLRP6P59044 892 aa15.71■□□□□ 0.11
LINC00540-203ENST00000631321 MAP3K5Q99683 1374 aa15.71■□□□□ 0.11
LINC00540-203ENST00000631321 APBB1O00213 710 aa15.7■□□□□ 0.1
LINC00540-203ENST00000631321 FAM208AQ9UK61 1670 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms