RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RASSF7Q02833 373 aa7.49□□□□□ -1.21
SCN1A-208ENST00000625916 WHAMMQ8TF30 809 aa7.49□□□□□ -1.21
SCN1A-208ENST00000625916 GSK3AP49840 483 aa7.48□□□□□ -1.21
SCN1A-208ENST00000625916 RNF144AP50876 292 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-208ENST00000625916 ADAMTS2O95450 1211 aa7.47□□□□□ -1.21
SCN1A-208ENST00000625916 MARSP56192 900 aaKnown RBP7.47□□□□□ -1.21
SCN1A-208ENST00000625916 RNF20Q5VTR2 975 aa7.47□□□□□ -1.21
SCN1A-208ENST00000625916 CCDC125Q86Z20 511 aa7.47□□□□□ -1.21
SCN1A-208ENST00000625916 GJD4Q96KN9 370 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-208ENST00000625916 CUEDC1Q9NWM3 386 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-208ENST00000625916 CC2D2BQ6DHV5 1058 aa7.46□□□□□ -1.22
SCN1A-208ENST00000625916 RIPOR1Q6ZS17 1223 aa7.46□□□□□ -1.22
SCN1A-208ENST00000625916 NLRP3Q96P20 1036 aa7.46□□□□□ -1.22
SCN1A-208ENST00000625916 ESF1Q9H501 851 aaKnown RBP7.46□□□□□ -1.22
SCN1A-208ENST00000625916 A0A1W2PRU2 124 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 ARHGEF15O94989 841 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 GPC1P35052 558 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 MAP3K10Q02779 954 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 SRSF11Q05519 484 aaKnown RBP7.45□□□□□ -1.22
SCN1A-208ENST00000625916 SLC27A3Q5K4L6 730 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 FOXR1Q6PIV2 292 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 ZNF592Q92610 1267 aa7.45□□□□□ -1.22
SCN1A-208ENST00000625916 ZNF330Q9Y3S2 320 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-208ENST00000625916 IRS1P35568 1242 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 MCCD1P59942 119 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-208ENST00000625916 ERVK-9P63128 1117 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 NR1H3Q13133 447 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 LYPD4Q6UWN0 246 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 CYP2U1Q7Z449 544 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 PCDHB11Q9Y5F2 797 aa7.44□□□□□ -1.22
SCN1A-208ENST00000625916 POU4F2Q12837 409 aa7.43□□□□□ -1.22
SCN1A-208ENST00000625916 GAS6Q14393 721 aa7.43□□□□□ -1.22
SCN1A-208ENST00000625916 TRIM22Q8IYM9 498 aa7.43□□□□□ -1.22
SCN1A-208ENST00000625916 ZNF837Q96EG3 531 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-208ENST00000625916 GMCL1Q96IK5 515 aa7.43□□□□□ -1.22
SCN1A-208ENST00000625916 GAS2L1Q99501 681 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-208ENST00000625916 GPR25O00155 361 aa7.42□□□□□ -1.22
SCN1A-208ENST00000625916 SCARF2Q96GP6 870 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-208ENST00000625916 H7C1W4 665 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 CELA2BP08218 269 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-208ENST00000625916 SCTRP47872 440 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 DBN1Q16643 649 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 ENAMQ9NRM1 1142 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 MBIPQ9NS73 344 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 DYRK1BQ9Y463 629 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 NDUFB9Q9Y6M9 179 aa7.41□□□□□ -1.22
SCN1A-208ENST00000625916 CLN3Q13286 438 aa7.4□□□□□ -1.22
SCN1A-208ENST00000625916 KANK3Q6NY19 840 aa7.4□□□□□ -1.22
SCN1A-208ENST00000625916 BANK1Q8NDB2 785 aa7.4□□□□□ -1.22
SCN1A-208ENST00000625916 GTPBP3Q969Y2 492 aaKnown RBP7.4□□□□□ -1.22
SCN1A-208ENST00000625916 TRERF1Q96PN7 1200 aa7.4□□□□□ -1.22
SCN1A-208ENST00000625916 ARHGEF10LQ9HCE6 1279 aa7.4□□□□□ -1.22
SCN1A-208ENST00000625916 APBB1O00213 710 aa7.39□□□□□ -1.23
SCN1A-208ENST00000625916 SUZ12Q15022 739 aaKnown RBP7.39□□□□□ -1.23
SCN1A-208ENST00000625916 NBPF10Q6P3W6 841 aaKnown RBP7.39□□□□□ -1.23
SCN1A-208ENST00000625916 NBPF15Q8N660 670 aa7.39□□□□□ -1.23
SCN1A-208ENST00000625916 OSBPL3Q9H4L5 887 aa7.39□□□□□ -1.23
SCN1A-208ENST00000625916 IGF1RP08069 1367 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 GPAT2Q6NUI2 795 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 TAS1R3Q7RTX0 852 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 MTMR14Q8NCE2 650 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 GRIP2Q9C0E4 1043 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 TIMMDC1Q9NPL8 285 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 RAB6BQ9NRW1 208 aa7.38□□□□□ -1.23
SCN1A-208ENST00000625916 DNMT3AQ9Y6K1 912 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-208ENST00000625916 SLC24A1O60721 1099 aa7.37□□□□□ -1.23
SCN1A-208ENST00000625916 BRPF1P55201 1214 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-208ENST00000625916 SPATA31C2B4DYI2 1134 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 WASLO00401 505 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-208ENST00000625916 SOCS7O14512 581 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 TRAK2O60296 914 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 MYCP01106 439 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-208ENST00000625916 WDR44Q5JSH3 913 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 NEDD1Q8NHV4 660 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 NUCKS1Q9H1E3 243 aaKnown RBP7.36□□□□□ -1.23
SCN1A-208ENST00000625916 SNRKQ9NRH2 765 aa7.36□□□□□ -1.23
SCN1A-208ENST00000625916 GNRH1P01148 92 aa7.35□□□□□ -1.23
SCN1A-208ENST00000625916 F11P03951 625 aa7.35□□□□□ -1.23
SCN1A-208ENST00000625916 BCRP11274 1271 aa7.35□□□□□ -1.23
SCN1A-208ENST00000625916 MX2P20592 715 aa7.35□□□□□ -1.23
SCN1A-208ENST00000625916 CNKSR1Q969H4 720 aa7.35□□□□□ -1.23
SCN1A-208ENST00000625916 NSFL1CQ9UNZ2 370 aaKnown RBP7.35□□□□□ -1.23
SCN1A-208ENST00000625916 LOC100996750A0A140TA64 210 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 PHF20L1A8MW92 1017 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 GPR37L1O60883 481 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 IGHA1P01876 353 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 GTF2E1P29083 439 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-208ENST00000625916 PODNQ7Z5L7 613 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 ESYT1Q9BSJ8 1104 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 KRTAP4-6Q9BYQ5 205 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 CEP126Q9P2H0 1117 aa7.34□□□□□ -1.23
SCN1A-208ENST00000625916 PHKA2P46019 1235 aa7.33□□□□□ -1.24
SCN1A-208ENST00000625916 FOXK2Q01167 660 aa7.33□□□□□ -1.24
SCN1A-208ENST00000625916 CENPCQ03188 943 aa7.33□□□□□ -1.24
SCN1A-208ENST00000625916 BEND7Q8N7W2 519 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-208ENST00000625916 ACDQ96AP0 544 aa7.33□□□□□ -1.24
SCN1A-208ENST00000625916 ZSCAN10Q96SZ4 725 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-208ENST00000625916 GPAMQ9HCL2 828 aa7.33□□□□□ -1.24
SCN1A-208ENST00000625916 CNTNAP5Q8WYK1 1306 aa7.32□□□□□ -1.24
SCN1A-208ENST00000625916 IL2RAP01589 272 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms