RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 API5Q9BZZ5 524 aaKnown RBP17.29■□□□□ 0.36
LDB3-209ENST00000623056 MBIPQ9NS73 344 aa17.29■□□□□ 0.36
LDB3-209ENST00000623056 SENP3Q9H4L4 574 aaPredicted RBP17.28■□□□□ 0.36
LDB3-209ENST00000623056 IFT57Q9NWB7 429 aa17.28■□□□□ 0.36
LDB3-209ENST00000623056 VGFO15240 615 aaPredicted RBP17.27■□□□□ 0.36
LDB3-209ENST00000623056 SDSP20132 328 aa17.27■□□□□ 0.36
LDB3-209ENST00000623056 MLECQ14165 292 aa17.27■□□□□ 0.36
LDB3-209ENST00000623056 TWISTNBQ3B726 338 aaPredicted RBP17.27■□□□□ 0.35
LDB3-209ENST00000623056 ZNF853P0CG23 659 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 IDI1Q13907 227 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 FBXO31Q5XUX0 539 aaPredicted RBP17.26■□□□□ 0.35
LDB3-209ENST00000623056 CASC1Q6TDU7 716 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 RNF214Q8ND24 703 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 ARID3AQ99856 593 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 STK26Q9P289 416 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 KIF24Q5T7B8 1368 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 MBD3O95983 291 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 SMAP1Q8IYB5 467 aaPredicted RBP17.26■□□□□ 0.35
LDB3-209ENST00000623056 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
LDB3-209ENST00000623056 HMOX1P09601 288 aa17.25■□□□□ 0.35
LDB3-209ENST00000623056 FOXD4L5Q5VV16 416 aaPredicted RBP17.25■□□□□ 0.35
LDB3-209ENST00000623056 C8orf58Q8NAV2 365 aa17.25■□□□□ 0.35
LDB3-209ENST00000623056 FOXD4L4Q8WXT5 416 aaPredicted RBP17.25■□□□□ 0.35
LDB3-209ENST00000623056 PIK3C2BO00750 1634 aa17.25■□□□□ 0.35
LDB3-209ENST00000623056 REC8O95072 547 aa17.24■□□□□ 0.35
LDB3-209ENST00000623056 ANKRD44Q8N8A2 993 aa17.24■□□□□ 0.35
LDB3-209ENST00000623056 MINK1Q8N4C8 1332 aaPredicted RBP17.23■□□□□ 0.35
LDB3-209ENST00000623056 ATP10DQ9P241 1426 aa17.23■□□□□ 0.35
LDB3-209ENST00000623056 HDGFL2Q7Z4V5 671 aaPredicted RBP17.23■□□□□ 0.35
LDB3-209ENST00000623056 KIF20BQ96Q89 1820 aa17.23■□□□□ 0.35
LDB3-209ENST00000623056 SMARCA5O60264 1052 aaPredicted RBP17.22■□□□□ 0.35
LDB3-209ENST00000623056 PTMAP06454 111 aaKnown RBP17.22■□□□□ 0.35
LDB3-209ENST00000623056 FBLN1P23142 703 aa17.22■□□□□ 0.35
LDB3-209ENST00000623056 KIAA2012Q0VF49 1180 aa17.22■□□□□ 0.35
LDB3-209ENST00000623056 TSPY26PQ9H489 355 aa17.22■□□□□ 0.35
LDB3-209ENST00000623056 POLKQ9UBT6 870 aa17.22■□□□□ 0.35
LDB3-209ENST00000623056 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.22■□□□□ 0.35
LDB3-209ENST00000623056 PREX1Q8TCU6 1659 aa17.22■□□□□ 0.35
LDB3-209ENST00000623056 ERC2O15083 957 aa17.21■□□□□ 0.35
LDB3-209ENST00000623056 PTPRMP28827 1452 aa17.21■□□□□ 0.35
LDB3-209ENST00000623056 APBB1O00213 710 aa17.2■□□□□ 0.34
LDB3-209ENST00000623056 BRD1O95696 1058 aa17.2■□□□□ 0.34
LDB3-209ENST00000623056 CEP85Q6P2H3 762 aa17.2■□□□□ 0.34
LDB3-209ENST00000623056 TMX3Q96JJ7 454 aa17.2■□□□□ 0.34
LDB3-209ENST00000623056 CLTCQ00610 1675 aaKnown RBP17.2■□□□□ 0.34
LDB3-209ENST00000623056 RPAP2Q8IXW5 612 aaPredicted RBP17.2■□□□□ 0.34
LDB3-209ENST00000623056 MYRIPQ8NFW9 859 aa17.19■□□□□ 0.34
LDB3-209ENST00000623056 PRAM1Q96QH2 718 aa17.19■□□□□ 0.34
LDB3-209ENST00000623056 CCDC94Q9BW85 323 aaPredicted RBP17.19■□□□□ 0.34
LDB3-209ENST00000623056 AGLP35573 1532 aa17.19■□□□□ 0.34
LDB3-209ENST00000623056 ARHGEF40Q8TER5 1519 aa17.19■□□□□ 0.34
LDB3-209ENST00000623056 NEK4P51957 841 aa17.19■□□□□ 0.34
LDB3-209ENST00000623056 PRDM10Q9NQV6 1147 aa17.18■□□□□ 0.34
LDB3-209ENST00000623056 SYAP1Q96A49 352 aaPredicted RBP17.18■□□□□ 0.34
LDB3-209ENST00000623056 SLC52A1Q9NWF4 448 aa17.18■□□□□ 0.34
LDB3-209ENST00000623056 CABP1Q9NZU7 370 aa17.18■□□□□ 0.34
LDB3-209ENST00000623056 YTHDC2Q9H6S0 1430 aaKnown RBP17.17■□□□□ 0.34
LDB3-209ENST00000623056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.17■□□□□ 0.34
LDB3-209ENST00000623056 MYO5BQ9ULV0 1848 aa17.17■□□□□ 0.34
LDB3-209ENST00000623056 DNTTIP2Q5QJE6 756 aaKnown RBP17.16■□□□□ 0.34
LDB3-209ENST00000623056 RIMS2Q9UQ26 1411 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 RTL1A6NKG5 1358 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 ZBTB7CA1YPR0 619 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 LMOD3Q0VAK6 560 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 CUL4AQ13619 759 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 RGS12O14924 1447 aa17.16■□□□□ 0.34
LDB3-209ENST00000623056 FAM83GA6ND36 823 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 IL13P35225 146 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 MCM2P49736 904 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 JARID2Q92833 1246 aaPredicted RBP17.15■□□□□ 0.34
LDB3-209ENST00000623056 CDK19Q9BWU1 502 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 DLG5Q8TDM6 1919 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 MSH6P52701 1360 aa17.15■□□□□ 0.34
LDB3-209ENST00000623056 MAP2P11137 1827 aaKnown RBP17.14■□□□□ 0.34
LDB3-209ENST00000623056 PIBF1Q8WXW3 757 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 PRIMPOLQ96LW4 560 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 EMILIN1Q9Y6C2 1016 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 TMEM131LA2VDJ0 1609 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 PHF14O94880 888 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 MPNDQ8N594 471 aa17.14■□□□□ 0.33
LDB3-209ENST00000623056 GADD45BO75293 160 aaPredicted RBP17.13■□□□□ 0.33
LDB3-209ENST00000623056 DCTN1Q14203 1278 aa17.13■□□□□ 0.33
LDB3-209ENST00000623056 ZNF710Q8N1W2 664 aa17.13■□□□□ 0.33
LDB3-209ENST00000623056 TSC1Q92574 1164 aa17.13■□□□□ 0.33
LDB3-209ENST00000623056 ZNF830Q96NB3 372 aaPredicted RBP17.13■□□□□ 0.33
LDB3-209ENST00000623056 NOLC1Q14978 699 aaKnown RBP eCLIP17.13■□□□□ 0.33
LDB3-209ENST00000623056 INTS4Q96HW7 963 aaKnown RBP17.13■□□□□ 0.33
LDB3-209ENST00000623056 MEIS3Q99687 375 aa17.13■□□□□ 0.33
LDB3-209ENST00000623056 PDE1AP54750 535 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 KRT24Q2M2I5 525 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 OSBPL3Q9H4L5 887 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 GDPD2Q9HCC8 539 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 CPSF1Q10570 1443 aaKnown RBP17.12■□□□□ 0.33
LDB3-209ENST00000623056 GTF2F1P35269 517 aaKnown RBP eCLIP17.12■□□□□ 0.33
LDB3-209ENST00000623056 DMTNQ08495 405 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 UVSSAQ2YD98 709 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 FOXD4L6Q3SYB3 417 aaPredicted RBP17.12■□□□□ 0.33
LDB3-209ENST00000623056 FOXD4L3Q6VB84 417 aaPredicted RBP17.12■□□□□ 0.33
LDB3-209ENST00000623056 NOL8Q76FK4 1167 aaKnown RBP17.12■□□□□ 0.33
LDB3-209ENST00000623056 FAM184AQ8NB25 1140 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms