RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 GOLGA6L6A8MZA4 724 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 MBD3O95983 291 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 CTR9Q6PD62 1173 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 CCDC146Q8IYE0 955 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 PIK3R5Q8WYR1 880 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 SPINK5Q9NQ38 1064 aaPredicted RBP9.56□□□□□ -0.88
VPS11-209ENST00000622309 SETD1BQ9UPS6 1966 aaKnown RBP9.56□□□□□ -0.88
VPS11-209ENST00000622309 PLCH2O75038 1416 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 SHANK2Q9UPX8 1470 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 CD2BP2O95400 341 aaKnown RBP9.55□□□□□ -0.88
VPS11-209ENST00000622309 HNRNPH2P55795 449 aaKnown RBP9.55□□□□□ -0.88
VPS11-209ENST00000622309 KIF18AQ8NI77 898 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 SYAP1Q96A49 352 aaPredicted RBP9.55□□□□□ -0.88
VPS11-209ENST00000622309 PREX2Q70Z35 1606 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 SYCP1Q15431 976 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 BANK1Q8NDB2 785 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 TMX1Q9H3N1 280 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 RAD51AP2Q09MP3 1159 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 TMTC2Q8N394 836 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 SH3BP1Q9Y3L3 701 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 TRAPPC8Q9Y2L5 1435 aa9.55□□□□□ -0.88
VPS11-209ENST00000622309 APAF1O14727 1248 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 USP25Q9UHP3 1055 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 SPAG9O60271 1321 aaKnown RBP9.54□□□□□ -0.88
VPS11-209ENST00000622309 FAM135AQ9P2D6 1515 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 LTBP4Q8N2S1 1624 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 ARHGAP31Q2M1Z3 1444 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 NPC1L1Q9UHC9 1359 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 PHF14O94880 888 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 ADCY5O95622 1261 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 CEBPAP49715 358 aaPredicted RBP9.54□□□□□ -0.88
VPS11-209ENST00000622309 UVSSAQ2YD98 709 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 FAM184AQ8NB25 1140 aa9.54□□□□□ -0.88
VPS11-209ENST00000622309 ESF1Q9H501 851 aaKnown RBP9.54□□□□□ -0.88
VPS11-209ENST00000622309 NOL10Q9BSC4 688 aaKnown RBP9.53□□□□□ -0.88
VPS11-209ENST00000622309 RBM42Q9BTD8 480 aaKnown RBP9.53□□□□□ -0.88
VPS11-209ENST00000622309 SMC4Q9NTJ3 1288 aa9.53□□□□□ -0.88
VPS11-209ENST00000622309 DHX16O60231 1041 aaKnown RBP9.53□□□□□ -0.88
VPS11-209ENST00000622309 ZNF518AQ6AHZ1 1483 aa9.53□□□□□ -0.88
VPS11-209ENST00000622309 NCAPGQ9BPX3 1015 aa9.52□□□□□ -0.88
VPS11-209ENST00000622309 REREQ9P2R6 1566 aa9.52□□□□□ -0.88
VPS11-209ENST00000622309 ARHGEF5Q12774 1597 aa9.52□□□□□ -0.89
VPS11-209ENST00000622309 TPM3P06753 285 aa9.52□□□□□ -0.89
VPS11-209ENST00000622309 ICE2Q659A1 982 aa9.52□□□□□ -0.89
VPS11-209ENST00000622309 SENP3Q9H4L4 574 aaPredicted RBP9.52□□□□□ -0.89
VPS11-209ENST00000622309 NOP2P46087 812 aaKnown RBP9.52□□□□□ -0.89
VPS11-209ENST00000622309 KIAA1524Q8TCG1 905 aa9.52□□□□□ -0.89
VPS11-209ENST00000622309 RALGAPBQ86X10 1494 aa9.52□□□□□ -0.89
VPS11-209ENST00000622309 KIF3BO15066 747 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 CCDC112Q8NEF3 446 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 SLC26A8Q96RN1 970 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 MYO5CQ9NQX4 1742 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 SMTNL1A8MU46 457 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 RLBP1P12271 317 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 CYP2C19P33261 490 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 ARMCX6Q7L4S7 300 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 ZNF397Q8NF99 534 aaPredicted RBP9.51□□□□□ -0.89
VPS11-209ENST00000622309 KIF2CQ99661 725 aa9.51□□□□□ -0.89
VPS11-209ENST00000622309 SETQ01105 290 aaPredicted RBP9.5□□□□□ -0.89
VPS11-209ENST00000622309 C10orf67Q8IYJ2 551 aa9.5□□□□□ -0.89
VPS11-209ENST00000622309 GOLGA6L1Q8N7Z2 621 aa9.5□□□□□ -0.89
VPS11-209ENST00000622309 BRD1O95696 1058 aa9.5□□□□□ -0.89
VPS11-209ENST00000622309 PPP2R1AP30153 589 aa9.5□□□□□ -0.89
VPS11-209ENST00000622309 BRPF1P55201 1214 aaPredicted RBP9.5□□□□□ -0.89
VPS11-209ENST00000622309 TOMM22Q9NS69 142 aa9.5□□□□□ -0.89
VPS11-209ENST00000622309 NSFL1CQ9UNZ2 370 aaKnown RBP9.5□□□□□ -0.89
VPS11-209ENST00000622309 AGLP35573 1532 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 PKP1Q13835 747 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 TEX35Q5T0J7 233 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 SIRT1Q96EB6 747 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 BCL2L13Q9BXK5 485 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 BRMS1Q9HCU9 246 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 E9PCH4 1651 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 CYP2E1P05181 493 aaPredicted RBP9.49□□□□□ -0.89
VPS11-209ENST00000622309 CASQ1P31415 396 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 SRPK2P78362 688 aaKnown RBP9.49□□□□□ -0.89
VPS11-209ENST00000622309 PYCARDQ9ULZ3 195 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 TNNQ9UQP3 1299 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 MAFGO15525 162 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 REC8O95072 547 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 RARSP54136 660 aaKnown RBP9.49□□□□□ -0.89
VPS11-209ENST00000622309 NAA30Q147X3 362 aaPredicted RBP9.49□□□□□ -0.89
VPS11-209ENST00000622309 KNSTRNQ9Y448 316 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 CEP83Q9Y592 693 aa9.49□□□□□ -0.89
VPS11-209ENST00000622309 PLA2R1Q13018 1463 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 UBAP1LF5GYI3 381 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 CHGAP10645 457 aaKnown RBP9.48□□□□□ -0.89
VPS11-209ENST00000622309 POLD1P28340 1107 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 STK24Q9Y6E0 443 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 MVPQ14764 893 aaKnown RBP9.48□□□□□ -0.89
VPS11-209ENST00000622309 RABEP1Q15276 862 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 PAXBP1Q9Y5B6 917 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 C3P01024 1663 aa9.48□□□□□ -0.89
VPS11-209ENST00000622309 CCDC172P0C7W6 258 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 GUCY2CP25092 1073 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 TXLNBQ8N3L3 684 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 ZNF513Q8N8E2 541 aaPredicted RBP9.47□□□□□ -0.89
VPS11-209ENST00000622309 C16orf45Q96MC5 204 aaPredicted RBP9.47□□□□□ -0.89
VPS11-209ENST00000622309 ST7Q9NRC1 585 aa9.47□□□□□ -0.89
VPS11-209ENST00000622309 NPATQ14207 1427 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms