RNA–Protein interactions for RNA: ENST00000621008.1

PCDHGC3-206, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 2

Gene PCDHGC3, Length 845 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-206ENST00000621008 MEGF6O75095 1541 aa17.42■□□□□ 0.38
PCDHGC3-206ENST00000621008 DIAPH1O60610 1272 aaKnown RBP17.42■□□□□ 0.38
PCDHGC3-206ENST00000621008 IL13P35225 146 aa17.42■□□□□ 0.38
PCDHGC3-206ENST00000621008 KDRP35968 1356 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 PKD1L3Q7Z443 1732 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 TNS1Q9HBL0 1735 aaKnown RBP17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 RGPD3A6NKT7 1758 aaPredicted RBP17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 RGPD4Q7Z3J3 1758 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 PLSCR1O15162 318 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 TRIM37O94972 964 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 AMOTQ4VCS5 1084 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 FAM182BQ5T319 152 aa17.41■□□□□ 0.38
PCDHGC3-206ENST00000621008 HMGB2P26583 209 aaKnown RBP17.4■□□□□ 0.38
PCDHGC3-206ENST00000621008 DDX10Q13206 875 aaKnown RBP17.4■□□□□ 0.38
PCDHGC3-206ENST00000621008 USHBP1Q8N6Y0 703 aa17.4■□□□□ 0.38
PCDHGC3-206ENST00000621008 ZNF316A6NFI3 1004 aaPredicted RBP17.39■□□□□ 0.37
PCDHGC3-206ENST00000621008 NUDCQ9Y266 331 aa17.39■□□□□ 0.37
PCDHGC3-206ENST00000621008 SHANK3Q9BYB0 1731 aa17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 APBA3O96018 575 aa17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 PPP2R1AP30153 589 aa17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 PLEKHO1Q53GL0 409 aaPredicted RBP17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 DDX54Q8TDD1 881 aaKnown RBP17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 NHSQ6T4R5 1651 aa17.38■□□□□ 0.37
PCDHGC3-206ENST00000621008 NKX1-1Q15270 411 aaPredicted RBP17.37■□□□□ 0.37
PCDHGC3-206ENST00000621008 HSP90AB1P08238 724 aaKnown RBP17.36■□□□□ 0.37
PCDHGC3-206ENST00000621008 IFNL2Q8IZJ0 200 aa17.36■□□□□ 0.37
PCDHGC3-206ENST00000621008 COL3A1P02461 1466 aaPredicted RBP17.36■□□□□ 0.37
PCDHGC3-206ENST00000621008 SULT6B1Q6IMI4 303 aa17.35■□□□□ 0.37
PCDHGC3-206ENST00000621008 CAMKK2Q96RR4 588 aa17.35■□□□□ 0.37
PCDHGC3-206ENST00000621008 KAT6BQ8WYB5 2073 aa17.35■□□□□ 0.37
PCDHGC3-206ENST00000621008 DEFB132Q7Z7B7 95 aa17.33■□□□□ 0.36
PCDHGC3-206ENST00000621008 CYP27B1O15528 508 aa17.32■□□□□ 0.36
PCDHGC3-206ENST00000621008 EN1Q05925 392 aaPredicted RBP17.32■□□□□ 0.36
PCDHGC3-206ENST00000621008 MYBBP1AQ9BQG0 1328 aaKnown RBP17.31■□□□□ 0.36
PCDHGC3-206ENST00000621008 PHKG2P15735 406 aa17.31■□□□□ 0.36
PCDHGC3-206ENST00000621008 RREB1Q92766 1687 aa17.3■□□□□ 0.36
PCDHGC3-206ENST00000621008 CNGB1Q14028 1251 aaPredicted RBP17.3■□□□□ 0.36
PCDHGC3-206ENST00000621008 PNNQ9H307 717 aaKnown RBP17.3■□□□□ 0.36
PCDHGC3-206ENST00000621008 ERVV-2B6SEH9 535 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 FCHSD2O94868 740 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 C1orf141Q5JVX7 400 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 NBPF14Q5TI25 921 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 DCAF5Q96JK2 942 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 DOT1LQ8TEK3 1739 aa17.29■□□□□ 0.36
PCDHGC3-206ENST00000621008 BTAF1O14981 1849 aa17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 U2SURPO15042 1029 aaKnown RBP17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 KCNQ2O43526 872 aa17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 PRIM1P49642 420 aaKnown RBP17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 EZH2Q15910 746 aaKnown RBP17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 SLC27A3Q5K4L6 730 aa17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 AEBP1Q8IUX7 1158 aa17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 ACSBG1Q96GR2 724 aa17.28■□□□□ 0.36
PCDHGC3-206ENST00000621008 AKAP4Q5JQC9 854 aa17.27■□□□□ 0.36
PCDHGC3-206ENST00000621008 ZNF530Q6P9A1 599 aaPredicted RBP17.27■□□□□ 0.36
PCDHGC3-206ENST00000621008 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.36
PCDHGC3-206ENST00000621008 GAS2L2Q8NHY3 880 aa17.26■□□□□ 0.35
PCDHGC3-206ENST00000621008 SMARCC1Q92922 1105 aaPredicted RBP17.26■□□□□ 0.35
PCDHGC3-206ENST00000621008 SYTL4Q96C24 671 aaPredicted RBP17.25■□□□□ 0.35
PCDHGC3-206ENST00000621008 ITGB4P16144 1822 aa17.25■□□□□ 0.35
PCDHGC3-206ENST00000621008 NEFMP07197 916 aa17.24■□□□□ 0.35
PCDHGC3-206ENST00000621008 HMOX1P09601 288 aa17.24■□□□□ 0.35
PCDHGC3-206ENST00000621008 U2AF1L5P0DN76 240 aaPredicted RBP17.24■□□□□ 0.35
PCDHGC3-206ENST00000621008 U2AF1Q01081 240 aaKnown RBP eCLIP17.24■□□□□ 0.35
PCDHGC3-206ENST00000621008 TXNRD1Q16881 649 aa17.23■□□□□ 0.35
PCDHGC3-206ENST00000621008 TMOD3Q9NYL9 352 aa17.23■□□□□ 0.35
PCDHGC3-206ENST00000621008 NUP188Q5SRE5 1749 aa17.23■□□□□ 0.35
PCDHGC3-206ENST00000621008 LY75O60449 1722 aa17.22■□□□□ 0.35
PCDHGC3-206ENST00000621008 PTF1AQ7RTS3 328 aa17.22■□□□□ 0.35
PCDHGC3-206ENST00000621008 RSPH6AQ9H0K4 717 aa17.22■□□□□ 0.35
PCDHGC3-206ENST00000621008 TOGARAM1Q9Y4F4 1720 aa17.21■□□□□ 0.35
PCDHGC3-206ENST00000621008 SCN11AQ9UI33 1791 aa17.2■□□□□ 0.34
PCDHGC3-206ENST00000621008 MTHFSDQ2M296 383 aaKnown RBP17.2■□□□□ 0.34
PCDHGC3-206ENST00000621008 MPRIPQ6WCQ1 1025 aa17.2■□□□□ 0.34
PCDHGC3-206ENST00000621008 PROM2Q8N271 834 aa17.2■□□□□ 0.34
PCDHGC3-206ENST00000621008 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
PCDHGC3-206ENST00000621008 PRKAR2BP31323 418 aa17.19■□□□□ 0.34
PCDHGC3-206ENST00000621008 PIGBQ92521 554 aa17.19■□□□□ 0.34
PCDHGC3-206ENST00000621008 ADAMTS7Q9UKP4 1686 aa17.19■□□□□ 0.34
PCDHGC3-206ENST00000621008 GNAT3A8MTJ3 354 aa17.18■□□□□ 0.34
PCDHGC3-206ENST00000621008 ANP32CO43423 234 aa17.18■□□□□ 0.34
PCDHGC3-206ENST00000621008 CABP4P57796 275 aa17.18■□□□□ 0.34
PCDHGC3-206ENST00000621008 ZNF831Q5JPB2 1677 aa17.17■□□□□ 0.34
PCDHGC3-206ENST00000621008 KDM6AO15550 1401 aaPredicted RBP17.17■□□□□ 0.34
PCDHGC3-206ENST00000621008 STK32BQ9NY57 414 aa17.17■□□□□ 0.34
PCDHGC3-206ENST00000621008 PALLDQ8WX93 1383 aa17.16■□□□□ 0.34
PCDHGC3-206ENST00000621008 MAP3K5Q99683 1374 aa17.16■□□□□ 0.34
PCDHGC3-206ENST00000621008 MRC1P22897 1456 aa17.16■□□□□ 0.34
PCDHGC3-206ENST00000621008 VIRMAQ69YN4 1812 aaKnown RBP17.15■□□□□ 0.34
PCDHGC3-206ENST00000621008 RNMTO43148 476 aaKnown RBP17.15■□□□□ 0.34
PCDHGC3-206ENST00000621008 SLC52A2Q9HAB3 445 aa17.15■□□□□ 0.34
PCDHGC3-206ENST00000621008 CCNL1Q9UK58 526 aaPredicted RBP17.15■□□□□ 0.34
PCDHGC3-206ENST00000621008 PAPPAQ13219 1627 aa17.14■□□□□ 0.33
PCDHGC3-206ENST00000621008 WDR43Q15061 677 aaKnown RBP eCLIP17.14■□□□□ 0.33
PCDHGC3-206ENST00000621008 SLC15A2Q16348 729 aa17.14■□□□□ 0.33
PCDHGC3-206ENST00000621008 RTF1Q92541 710 aaKnown RBP17.13■□□□□ 0.33
PCDHGC3-206ENST00000621008 PHACTR3Q96KR7 559 aa17.13■□□□□ 0.33
PCDHGC3-206ENST00000621008 PLEKHF1Q96S99 279 aa17.13■□□□□ 0.33
PCDHGC3-206ENST00000621008 MAPK8IP3Q9UPT6 1336 aa17.13■□□□□ 0.33
PCDHGC3-206ENST00000621008 QSER1Q2KHR3 1735 aa17.13■□□□□ 0.33
PCDHGC3-206ENST00000621008 NFATC2IPQ8NCF5 419 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms