RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 RGS3P49796 1198 aa25.72■■□□□ 1.71
MMP28-207ENST00000619655 NBPF6Q5VWK0 638 aa25.72■■□□□ 1.71
MMP28-207ENST00000619655 MRPL50Q8N5N7 158 aaKnown RBP25.72■■□□□ 1.71
MMP28-207ENST00000619655 NBPF4Q96M43 638 aa25.72■■□□□ 1.71
MMP28-207ENST00000619655 CADPS2Q86UW7 1296 aa25.71■■□□□ 1.71
MMP28-207ENST00000619655 LRRC59Q96AG4 307 aaKnown RBP25.71■■□□□ 1.71
MMP28-207ENST00000619655 ANP32EQ9BTT0 268 aa25.71■■□□□ 1.71
MMP28-207ENST00000619655 AAMPQ13685 434 aa25.71■■□□□ 1.71
MMP28-207ENST00000619655 CRB1P82279 1406 aa25.71■■□□□ 1.71
MMP28-207ENST00000619655 MSH6P52701 1360 aa25.7■■□□□ 1.71
MMP28-207ENST00000619655 DDX19BQ9UMR2 479 aa25.7■■□□□ 1.7
MMP28-207ENST00000619655 DCCP43146 1447 aa25.7■■□□□ 1.7
MMP28-207ENST00000619655 ARHGEF25Q86VW2 580 aa25.69■■□□□ 1.7
MMP28-207ENST00000619655 STRCQ7RTU9 1775 aa25.69■■□□□ 1.7
MMP28-207ENST00000619655 SLIT3O75094 1523 aa25.69■■□□□ 1.7
MMP28-207ENST00000619655 RGPD2P0DJD1 1756 aa25.69■■□□□ 1.7
MMP28-207ENST00000619655 GNAT3A8MTJ3 354 aa25.69■■□□□ 1.7
MMP28-207ENST00000619655 PDE4AP27815 886 aa25.68■■□□□ 1.7
MMP28-207ENST00000619655 TSPYL4Q9UJ04 414 aa25.68■■□□□ 1.7
MMP28-207ENST00000619655 ZC3H6P61129 1189 aaKnown RBP25.68■■□□□ 1.7
MMP28-207ENST00000619655 USP19O94966 1318 aa25.67■■□□□ 1.7
MMP28-207ENST00000619655 NCOA3Q9Y6Q9 1424 aa25.67■■□□□ 1.7
MMP28-207ENST00000619655 BRPF1P55201 1214 aaPredicted RBP25.66■■□□□ 1.7
MMP28-207ENST00000619655 PHRF1Q9P1Y6 1649 aaKnown RBP25.64■■□□□ 1.7
MMP28-207ENST00000619655 MAP3K5Q99683 1374 aa25.64■■□□□ 1.7
MMP28-207ENST00000619655 ZNF335Q9H4Z2 1342 aaPredicted RBP25.64■■□□□ 1.7
MMP28-207ENST00000619655 ANKRD24Q8TF21 1146 aa25.64■■□□□ 1.69
MMP28-207ENST00000619655 AXIN2Q9Y2T1 843 aa25.64■■□□□ 1.69
MMP28-207ENST00000619655 XIRP1Q702N8 1843 aaKnown RBP25.63■■□□□ 1.69
MMP28-207ENST00000619655 ALS2Q96Q42 1657 aa25.63■■□□□ 1.69
MMP28-207ENST00000619655 RWDD1Q9H446 243 aaPredicted RBP25.63■■□□□ 1.69
MMP28-207ENST00000619655 NPHP3Q7Z494 1330 aa25.62■■□□□ 1.69
MMP28-207ENST00000619655 BACH2Q9BYV9 841 aa25.62■■□□□ 1.69
MMP28-207ENST00000619655 CABLES1Q8TDN4 633 aa25.62■■□□□ 1.69
MMP28-207ENST00000619655 HTATSF1O43719 755 aaKnown RBP25.61■■□□□ 1.69
MMP28-207ENST00000619655 IL17REQ8NFR9 667 aa25.61■■□□□ 1.69
MMP28-207ENST00000619655 ARHGAP45Q92619 1136 aa25.61■■□□□ 1.69
MMP28-207ENST00000619655 MED1Q15648 1581 aaPredicted RBP25.61■■□□□ 1.69
MMP28-207ENST00000619655 KIAA0232Q92628 1395 aa25.6■■□□□ 1.69
MMP28-207ENST00000619655 HAP1P54257 671 aaPredicted RBP25.59■■□□□ 1.69
MMP28-207ENST00000619655 ZBTB40Q9NUA8 1239 aa25.59■■□□□ 1.69
MMP28-207ENST00000619655 RGPD5Q99666 1765 aa25.58■■□□□ 1.69
MMP28-207ENST00000619655 NPM2Q86SE8 214 aaKnown RBP25.57■■□□□ 1.68
MMP28-207ENST00000619655 LRRC37A3O60309 1634 aa25.57■■□□□ 1.68
MMP28-207ENST00000619655 API5Q9BZZ5 524 aaKnown RBP25.56■■□□□ 1.68
MMP28-207ENST00000619655 ABCC4O15439 1325 aa25.55■■□□□ 1.68
MMP28-207ENST00000619655 BRINP3Q76B58 766 aa25.55■■□□□ 1.68
MMP28-207ENST00000619655 TNS3Q68CZ2 1445 aa25.55■■□□□ 1.68
MMP28-207ENST00000619655 ZNF530Q6P9A1 599 aaPredicted RBP25.54■■□□□ 1.68
MMP28-207ENST00000619655 C1orf115Q9H7X2 142 aa25.54■■□□□ 1.68
MMP28-207ENST00000619655 SLC4A2P04920 1241 aa25.53■■□□□ 1.68
MMP28-207ENST00000619655 PDZRN3Q9UPQ7 1066 aa25.53■■□□□ 1.68
MMP28-207ENST00000619655 TAF7Q15545 349 aaPredicted RBP25.53■■□□□ 1.68
MMP28-207ENST00000619655 LGR6Q9HBX8 967 aa25.53■■□□□ 1.68
MMP28-207ENST00000619655 ZBTB7BO15156 539 aaPredicted RBP25.52■■□□□ 1.68
MMP28-207ENST00000619655 MSH5O43196 834 aa25.52■■□□□ 1.68
MMP28-207ENST00000619655 ANP32AP39687 249 aaKnown RBP25.52■■□□□ 1.68
MMP28-207ENST00000619655 PXDNQ92626 1479 aa25.52■■□□□ 1.68
MMP28-207ENST00000619655 ERBB3P21860 1342 aa25.52■■□□□ 1.68
MMP28-207ENST00000619655 PLEKHO1Q53GL0 409 aaPredicted RBP25.52■■□□□ 1.68
MMP28-207ENST00000619655 NECTIN2Q92692 538 aa25.52■■□□□ 1.68
MMP28-207ENST00000619655 CHRNA2Q15822 529 aa25.51■■□□□ 1.67
MMP28-207ENST00000619655 SPATA31A3Q5VYP0 1347 aa25.51■■□□□ 1.67
MMP28-207ENST00000619655 MPRIPQ6WCQ1 1025 aa25.5■■□□□ 1.67
MMP28-207ENST00000619655 SLAIN2Q9P270 581 aa25.5■■□□□ 1.67
MMP28-207ENST00000619655 HDAC1Q13547 482 aaPredicted RBP25.49■■□□□ 1.67
MMP28-207ENST00000619655 FAM161AQ3B820 660 aa25.49■■□□□ 1.67
MMP28-207ENST00000619655 NLRP2Q9NX02 1062 aa25.49■■□□□ 1.67
MMP28-207ENST00000619655 AKAP4Q5JQC9 854 aa25.48■■□□□ 1.67
MMP28-207ENST00000619655 C1orf141Q5JVX7 400 aa25.48■■□□□ 1.67
MMP28-207ENST00000619655 CSB-PGBD3P0DP91 1061 aa25.47■■□□□ 1.67
MMP28-207ENST00000619655 C8orf34Q49A92 452 aa25.47■■□□□ 1.67
MMP28-207ENST00000619655 AMOTQ4VCS5 1084 aa25.47■■□□□ 1.67
MMP28-207ENST00000619655 CHMP4BQ9H444 224 aaKnown RBP25.47■■□□□ 1.67
MMP28-207ENST00000619655 CEMIPQ8WUJ3 1361 aa25.47■■□□□ 1.67
MMP28-207ENST00000619655 G2E3Q7L622 706 aa25.46■■□□□ 1.67
MMP28-207ENST00000619655 STK31Q9BXU1 1019 aa25.46■■□□□ 1.67
MMP28-207ENST00000619655 RGS12O14924 1447 aa25.45■■□□□ 1.66
MMP28-207ENST00000619655 PTPRCP08575 1304 aa25.45■■□□□ 1.66
MMP28-207ENST00000619655 TEFQ10587 303 aa25.45■■□□□ 1.66
MMP28-207ENST00000619655 NCAPD2Q15021 1401 aa25.45■■□□□ 1.66
MMP28-207ENST00000619655 LMO7Q8WWI1 1683 aa25.44■■□□□ 1.66
MMP28-207ENST00000619655 CAMTA1Q9Y6Y1 1673 aa25.43■■□□□ 1.66
MMP28-207ENST00000619655 SLC4A10Q6U841 1118 aa25.42■■□□□ 1.66
MMP28-207ENST00000619655 RAPGEF4Q8WZA2 1011 aa25.42■■□□□ 1.66
MMP28-207ENST00000619655 CCDC30Q5VVM6 783 aa25.42■■□□□ 1.66
MMP28-207ENST00000619655 BABAM1Q9NWV8 329 aa25.42■■□□□ 1.66
MMP28-207ENST00000619655 F6X3S4 739 aa25.41■■□□□ 1.66
MMP28-207ENST00000619655 INTS3Q68E01 1043 aaKnown RBP25.41■■□□□ 1.66
MMP28-207ENST00000619655 BTBD11A6QL63 1104 aa25.4■■□□□ 1.66
MMP28-207ENST00000619655 COL18A1P39060 1754 aa25.4■■□□□ 1.66
MMP28-207ENST00000619655 CRYBG1Q9Y4K1 1723 aa25.4■■□□□ 1.66
MMP28-207ENST00000619655 RNMTO43148 476 aaKnown RBP25.4■■□□□ 1.66
MMP28-207ENST00000619655 SMC5Q8IY18 1101 aa25.4■■□□□ 1.66
MMP28-207ENST00000619655 VIRMAQ69YN4 1812 aaKnown RBP25.39■■□□□ 1.66
MMP28-207ENST00000619655 KCNQ3O43525 872 aa25.39■■□□□ 1.66
MMP28-207ENST00000619655 FAM208AQ9UK61 1670 aaKnown RBP25.39■■□□□ 1.65
MMP28-207ENST00000619655 HDGFL1Q5TGJ6 251 aa25.38■■□□□ 1.65
MMP28-207ENST00000619655 EIF2S2P20042 333 aaKnown RBP25.37■■□□□ 1.65
MMP28-207ENST00000619655 FKBP5Q13451 457 aaPredicted RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms