RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 UBAP1LF5GYI3 381 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 IPO8O15397 1037 aaKnown RBP13.3□□□□□ -0.28
UPF3A-212ENST00000619079 SRPK2P78362 688 aaKnown RBP13.3□□□□□ -0.28
UPF3A-212ENST00000619079 MCTP1Q6DN14 999 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 CHMP4BQ9H444 224 aaKnown RBP13.3□□□□□ -0.28
UPF3A-212ENST00000619079 FOXD4L1Q9NU39 408 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 SBNO2Q9Y2G9 1366 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 TOM1O60784 492 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 RABEP1Q15276 862 aa13.3□□□□□ -0.28
UPF3A-212ENST00000619079 GTPBP4Q9BZE4 634 aaKnown RBP13.3□□□□□ -0.28
UPF3A-212ENST00000619079 CWC22Q9HCG8 908 aaKnown RBP13.3□□□□□ -0.28
UPF3A-212ENST00000619079 CD2BP2O95400 341 aaKnown RBP13.29□□□□□ -0.28
UPF3A-212ENST00000619079 HMGN5P82970 282 aaKnown RBP13.29□□□□□ -0.28
UPF3A-212ENST00000619079 LMBRD1Q9NUN5 540 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 PIP4K2BP78356 416 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 GCC1Q96CN9 775 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 PRIMPOLQ96LW4 560 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 LNPKQ9C0E8 428 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 EVC2Q86UK5 1308 aa13.29□□□□□ -0.28
UPF3A-212ENST00000619079 ADGRB2O60241 1585 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 A0A0U1RQG5 324 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-212ENST00000619079 WASLO00401 505 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-212ENST00000619079 KIAA2012Q0VF49 1180 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 MYRIPQ8NFW9 859 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 NALCNQ8IZF0 1738 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-212ENST00000619079 KIF20AO95235 890 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 CYP2E1P05181 493 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-212ENST00000619079 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
UPF3A-212ENST00000619079 LRSAM1Q6UWE0 723 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 CDK19Q9BWU1 502 aa13.28□□□□□ -0.28
UPF3A-212ENST00000619079 QRICH2Q9H0J4 1663 aa13.27□□□□□ -0.28
UPF3A-212ENST00000619079 TBC1D9Q6ZT07 1266 aa13.27□□□□□ -0.29
UPF3A-212ENST00000619079 USP32Q8NFA0 1604 aa13.27□□□□□ -0.29
UPF3A-212ENST00000619079 DCCP43146 1447 aa13.27□□□□□ -0.29
UPF3A-212ENST00000619079 ZSCAN20P17040 1043 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-212ENST00000619079 CABP2Q9NPB3 220 aa13.27□□□□□ -0.29
UPF3A-212ENST00000619079 SLAIN2Q9P270 581 aa13.27□□□□□ -0.29
UPF3A-212ENST00000619079 NSD3Q9BZ95 1437 aa13.26□□□□□ -0.29
UPF3A-212ENST00000619079 XIRP1Q702N8 1843 aaKnown RBP13.26□□□□□ -0.29
UPF3A-212ENST00000619079 CDC45O75419 566 aa13.26□□□□□ -0.29
UPF3A-212ENST00000619079 IL16Q14005 1332 aa13.26□□□□□ -0.29
UPF3A-212ENST00000619079 MBD3O95983 291 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 FGD1P98174 961 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 TMEM57Q8N5G2 664 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 SSH1Q8WYL5 1049 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 ZHX1Q9UKY1 873 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-212ENST00000619079 ESCO1Q5FWF5 840 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 CDC42BPGQ6DT37 1551 aa13.25□□□□□ -0.29
UPF3A-212ENST00000619079 LETM1O95202 739 aaPredicted RBP13.24□□□□□ -0.29
UPF3A-212ENST00000619079 GTF2F1P35269 517 aaKnown RBP eCLIP13.24□□□□□ -0.29
UPF3A-212ENST00000619079 NOB1Q9ULX3 412 aaKnown RBP13.24□□□□□ -0.29
UPF3A-212ENST00000619079 EXOSC9Q06265 439 aaKnown RBP13.24□□□□□ -0.29
UPF3A-212ENST00000619079 PRDM10Q9NQV6 1147 aa13.24□□□□□ -0.29
UPF3A-212ENST00000619079 PTMAP06454 111 aaKnown RBP13.23□□□□□ -0.29
UPF3A-212ENST00000619079 RBM42Q9BTD8 480 aaKnown RBP13.23□□□□□ -0.29
UPF3A-212ENST00000619079 NUDT16Q96DE0 195 aaKnown RBP13.23□□□□□ -0.29
UPF3A-212ENST00000619079 MST1RQ04912 1400 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 PRPF40AO75400 957 aaKnown RBP13.22□□□□□ -0.29
UPF3A-212ENST00000619079 MTHFSP49914 203 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 TSR2Q969E8 191 aaKnown RBP13.22□□□□□ -0.29
UPF3A-212ENST00000619079 ORAI2Q96SN7 254 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 ARID3AQ99856 593 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 NSD2O96028 1365 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 ALDH1L2Q3SY69 923 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 DNTTIP2Q5QJE6 756 aaKnown RBP13.22□□□□□ -0.29
UPF3A-212ENST00000619079 ANKRD45Q5TZF3 282 aa13.22□□□□□ -0.29
UPF3A-212ENST00000619079 TULP4Q9NRJ4 1543 aa13.21□□□□□ -0.29
UPF3A-212ENST00000619079 U2AF1L5P0DN76 240 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-212ENST00000619079 U2AF1Q01081 240 aaKnown RBP eCLIP13.21□□□□□ -0.29
UPF3A-212ENST00000619079 GPT2Q8TD30 523 aa13.21□□□□□ -0.29
UPF3A-212ENST00000619079 SYAP1Q96A49 352 aaPredicted RBP13.21□□□□□ -0.29
UPF3A-212ENST00000619079 ZNF428Q96B54 188 aa13.21□□□□□ -0.29
UPF3A-212ENST00000619079 C1orf167Q5SNV9 1468 aa13.21□□□□□ -0.29
UPF3A-212ENST00000619079 ST18O60284 1047 aa13.21□□□□□ -0.3
UPF3A-212ENST00000619079 TAF3Q5VWG9 929 aa13.21□□□□□ -0.3
UPF3A-212ENST00000619079 CCDC61Q9Y6R9 512 aa13.21□□□□□ -0.3
UPF3A-212ENST00000619079 PRR36Q9H6K5 1346 aa13.2□□□□□ -0.3
UPF3A-212ENST00000619079 SYCE3A1L190 88 aa13.2□□□□□ -0.3
UPF3A-212ENST00000619079 PHF14O94880 888 aa13.2□□□□□ -0.3
UPF3A-212ENST00000619079 BRINP3Q76B58 766 aa13.2□□□□□ -0.3
UPF3A-212ENST00000619079 ATAD2Q6PL18 1390 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 FAM184AQ8NB25 1140 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 NGDNQ8NEJ9 315 aaKnown RBP13.19□□□□□ -0.3
UPF3A-212ENST00000619079 PIBF1Q8WXW3 757 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 ANKARQ7Z5J8 1434 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 BRPF1P55201 1214 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-212ENST00000619079 TSPY26PQ9H489 355 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 TMEM63CQ9P1W3 806 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 PHF8Q9UPP1 1060 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 KIF3AQ9Y496 699 aa13.19□□□□□ -0.3
UPF3A-212ENST00000619079 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.19□□□□□ -0.3
UPF3A-212ENST00000619079 FMN2Q9NZ56 1722 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 PPIP5K1Q6PFW1 1433 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 FOXO3O43524 673 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 CABP1Q9NZU7 370 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 RBM27Q9P2N5 1060 aaKnown RBP13.18□□□□□ -0.3
UPF3A-212ENST00000619079 ATP7BP35670 1465 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 UVSSAQ2YD98 709 aa13.18□□□□□ -0.3
UPF3A-212ENST00000619079 PPP4R3BQ5MIZ7 849 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms