RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 TMEM57Q8N5G2 664 aa22.15■■□□□ 1.14
PCDHGC3-205ENST00000617641 DCCP43146 1447 aa22.15■■□□□ 1.14
PCDHGC3-205ENST00000617641 LMTK3Q96Q04 1460 aa22.15■■□□□ 1.14
PCDHGC3-205ENST00000617641 NCOA3Q9Y6Q9 1424 aa22.14■■□□□ 1.14
PCDHGC3-205ENST00000617641 PHRF1Q9P1Y6 1649 aaKnown RBP22.14■■□□□ 1.14
PCDHGC3-205ENST00000617641 PDE4AP27815 886 aa22.13■■□□□ 1.13
PCDHGC3-205ENST00000617641 KRT24Q2M2I5 525 aa22.13■■□□□ 1.13
PCDHGC3-205ENST00000617641 USP19O94966 1318 aa22.13■■□□□ 1.13
PCDHGC3-205ENST00000617641 ARHGEF25Q86VW2 580 aa22.12■■□□□ 1.13
PCDHGC3-205ENST00000617641 DDX17Q92841 729 aaKnown RBP22.12■■□□□ 1.13
PCDHGC3-205ENST00000617641 DDX19BQ9UMR2 479 aa22.12■■□□□ 1.13
PCDHGC3-205ENST00000617641 NBPF6Q5VWK0 638 aa22.12■■□□□ 1.13
PCDHGC3-205ENST00000617641 NBPF4Q96M43 638 aa22.12■■□□□ 1.13
PCDHGC3-205ENST00000617641 MIS18AQ9NYP9 233 aa22.11■■□□□ 1.13
PCDHGC3-205ENST00000617641 STRCQ7RTU9 1775 aa22.11■■□□□ 1.13
PCDHGC3-205ENST00000617641 RGS3P49796 1198 aa22.11■■□□□ 1.13
PCDHGC3-205ENST00000617641 ALS2Q96Q42 1657 aa22.1■■□□□ 1.13
PCDHGC3-205ENST00000617641 BACH2Q9BYV9 841 aa22.1■■□□□ 1.13
PCDHGC3-205ENST00000617641 RGPD2P0DJD1 1756 aa22.1■■□□□ 1.13
PCDHGC3-205ENST00000617641 CADPS2Q86UW7 1296 aa22.09■■□□□ 1.13
PCDHGC3-205ENST00000617641 MSH6P52701 1360 aa22.09■■□□□ 1.13
PCDHGC3-205ENST00000617641 GNAT3A8MTJ3 354 aa22.09■■□□□ 1.13
PCDHGC3-205ENST00000617641 KIAA0232Q92628 1395 aa22.08■■□□□ 1.13
PCDHGC3-205ENST00000617641 ARHGAP45Q92619 1136 aa22.08■■□□□ 1.13
PCDHGC3-205ENST00000617641 LRRC59Q96AG4 307 aaKnown RBP22.08■■□□□ 1.13
PCDHGC3-205ENST00000617641 HTATSF1O43719 755 aaKnown RBP22.08■■□□□ 1.12
PCDHGC3-205ENST00000617641 LRRC37A3O60309 1634 aa22.08■■□□□ 1.12
PCDHGC3-205ENST00000617641 XIRP1Q702N8 1843 aaKnown RBP22.08■■□□□ 1.12
PCDHGC3-205ENST00000617641 MAP3K5Q99683 1374 aa22.07■■□□□ 1.12
PCDHGC3-205ENST00000617641 TSPYL4Q9UJ04 414 aa22.07■■□□□ 1.12
PCDHGC3-205ENST00000617641 RWDD1Q9H446 243 aaPredicted RBP22.07■■□□□ 1.12
PCDHGC3-205ENST00000617641 MED1Q15648 1581 aaPredicted RBP22.06■■□□□ 1.12
PCDHGC3-205ENST00000617641 ZBTB40Q9NUA8 1239 aa22.05■■□□□ 1.12
PCDHGC3-205ENST00000617641 PRKCSHP14314 528 aaPredicted RBP22.04■■□□□ 1.12
PCDHGC3-205ENST00000617641 IL17REQ8NFR9 667 aa22.04■■□□□ 1.12
PCDHGC3-205ENST00000617641 ANKRD24Q8TF21 1146 aa22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 AXIN2Q9Y2T1 843 aa22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 ABCC4O15439 1325 aa22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 NPHP3Q7Z494 1330 aa22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 MSH5O43196 834 aa22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 HAP1P54257 671 aaPredicted RBP22.03■■□□□ 1.12
PCDHGC3-205ENST00000617641 ZC3H6P61129 1189 aaKnown RBP22.02■■□□□ 1.12
PCDHGC3-205ENST00000617641 API5Q9BZZ5 524 aaKnown RBP22.01■■□□□ 1.11
PCDHGC3-205ENST00000617641 ZNF335Q9H4Z2 1342 aaPredicted RBP22.01■■□□□ 1.11
PCDHGC3-205ENST00000617641 RGPD5Q99666 1765 aa22■■□□□ 1.11
PCDHGC3-205ENST00000617641 PDZRN3Q9UPQ7 1066 aa22■■□□□ 1.11
PCDHGC3-205ENST00000617641 NCAPD2Q15021 1401 aa21.99■■□□□ 1.11
PCDHGC3-205ENST00000617641 HDAC1Q13547 482 aaPredicted RBP21.99■■□□□ 1.11
PCDHGC3-205ENST00000617641 BCL11AQ9H165 835 aa21.99■■□□□ 1.11
PCDHGC3-205ENST00000617641 PXDNQ92626 1479 aa21.99■■□□□ 1.11
PCDHGC3-205ENST00000617641 TNS3Q68CZ2 1445 aa21.99■■□□□ 1.11
PCDHGC3-205ENST00000617641 ZBTB7BO15156 539 aaPredicted RBP21.98■■□□□ 1.11
PCDHGC3-205ENST00000617641 CABLES1Q8TDN4 633 aa21.97■■□□□ 1.11
PCDHGC3-205ENST00000617641 CAMTA1Q9Y6Y1 1673 aa21.97■■□□□ 1.11
PCDHGC3-205ENST00000617641 ANP32AP39687 249 aaKnown RBP21.97■■□□□ 1.11
PCDHGC3-205ENST00000617641 TAF7Q15545 349 aaPredicted RBP21.97■■□□□ 1.11
PCDHGC3-205ENST00000617641 FAM161AQ3B820 660 aa21.97■■□□□ 1.11
PCDHGC3-205ENST00000617641 C8orf34Q49A92 452 aa21.96■■□□□ 1.11
PCDHGC3-205ENST00000617641 BRINP3Q76B58 766 aa21.96■■□□□ 1.11
PCDHGC3-205ENST00000617641 ZNF530Q6P9A1 599 aaPredicted RBP21.96■■□□□ 1.11
PCDHGC3-205ENST00000617641 RGS12O14924 1447 aa21.96■■□□□ 1.11
PCDHGC3-205ENST00000617641 CEMIPQ8WUJ3 1361 aa21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 ERBB3P21860 1342 aa21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 NPM2Q86SE8 214 aaKnown RBP21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 SPATA31A3Q5VYP0 1347 aa21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 SLC4A2P04920 1241 aa21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 PLEKHO1Q53GL0 409 aaPredicted RBP21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 LGR6Q9HBX8 967 aa21.95■■□□□ 1.1
PCDHGC3-205ENST00000617641 C1orf115Q9H7X2 142 aa21.94■■□□□ 1.1
PCDHGC3-205ENST00000617641 LMO7Q8WWI1 1683 aa21.94■■□□□ 1.1
PCDHGC3-205ENST00000617641 CHMP4BQ9H444 224 aaKnown RBP21.94■■□□□ 1.1
PCDHGC3-205ENST00000617641 PTPRCP08575 1304 aa21.93■■□□□ 1.1
PCDHGC3-205ENST00000617641 AKAP4Q5JQC9 854 aa21.92■■□□□ 1.1
PCDHGC3-205ENST00000617641 BABAM1Q9NWV8 329 aa21.92■■□□□ 1.1
PCDHGC3-205ENST00000617641 AMOTQ4VCS5 1084 aa21.92■■□□□ 1.1
PCDHGC3-205ENST00000617641 CRYBG1Q9Y4K1 1723 aa21.91■■□□□ 1.1
PCDHGC3-205ENST00000617641 COL18A1P39060 1754 aa21.91■■□□□ 1.1
PCDHGC3-205ENST00000617641 INTS3Q68E01 1043 aaKnown RBP21.91■■□□□ 1.1
PCDHGC3-205ENST00000617641 G2E3Q7L622 706 aa21.91■■□□□ 1.1
PCDHGC3-205ENST00000617641 SMC5Q8IY18 1101 aa21.9■■□□□ 1.1
PCDHGC3-205ENST00000617641 MPRIPQ6WCQ1 1025 aa21.9■■□□□ 1.1
PCDHGC3-205ENST00000617641 SLAIN2Q9P270 581 aa21.9■■□□□ 1.1
PCDHGC3-205ENST00000617641 CHRNA2Q15822 529 aa21.89■■□□□ 1.1
PCDHGC3-205ENST00000617641 NECTIN2Q92692 538 aa21.89■■□□□ 1.1
PCDHGC3-205ENST00000617641 FAM208AQ9UK61 1670 aaKnown RBP21.89■■□□□ 1.09
PCDHGC3-205ENST00000617641 C1orf141Q5JVX7 400 aa21.89■■□□□ 1.09
PCDHGC3-205ENST00000617641 STK31Q9BXU1 1019 aa21.88■■□□□ 1.09
PCDHGC3-205ENST00000617641 NLRP2Q9NX02 1062 aa21.88■■□□□ 1.09
PCDHGC3-205ENST00000617641 CCDC30Q5VVM6 783 aa21.87■■□□□ 1.09
PCDHGC3-205ENST00000617641 IPO9Q96P70 1041 aaKnown RBP21.86■■□□□ 1.09
PCDHGC3-205ENST00000617641 RNMTO43148 476 aaKnown RBP21.86■■□□□ 1.09
PCDHGC3-205ENST00000617641 TEFQ10587 303 aa21.86■■□□□ 1.09
PCDHGC3-205ENST00000617641 VIRMAQ69YN4 1812 aaKnown RBP21.86■■□□□ 1.09
PCDHGC3-205ENST00000617641 KDM3BQ7LBC6 1761 aa21.85■■□□□ 1.09
PCDHGC3-205ENST00000617641 SIRT2Q8IXJ6 389 aa21.85■■□□□ 1.09
PCDHGC3-205ENST00000617641 SOS1Q07889 1333 aaPredicted RBP21.85■■□□□ 1.09
PCDHGC3-205ENST00000617641 F6X3S4 739 aa21.84■■□□□ 1.09
PCDHGC3-205ENST00000617641 CSB-PGBD3P0DP91 1061 aa21.84■■□□□ 1.09
PCDHGC3-205ENST00000617641 KCNQ3O43525 872 aa21.84■■□□□ 1.09
PCDHGC3-205ENST00000617641 EIF4A1P60842 406 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms