RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C22orf23Q9BZE7 217 aa17.97■□□□□ 0.47
SHROOM1-208ENST00000617339 MAP2P11137 1827 aaKnown RBP17.97■□□□□ 0.47
SHROOM1-208ENST00000617339 SIRT2Q8IXJ6 389 aa17.97■□□□□ 0.47
SHROOM1-208ENST00000617339 STK31Q9BXU1 1019 aa17.97■□□□□ 0.47
SHROOM1-208ENST00000617339 NLRP2Q9NX02 1062 aa17.97■□□□□ 0.47
SHROOM1-208ENST00000617339 SPATA31D1Q6ZQQ2 1576 aa17.96■□□□□ 0.47
SHROOM1-208ENST00000617339 FAM135BQ49AJ0 1406 aa17.96■□□□□ 0.47
SHROOM1-208ENST00000617339 MCM4P33991 863 aa17.96■□□□□ 0.47
SHROOM1-208ENST00000617339 AGLP35573 1532 aa17.96■□□□□ 0.46
SHROOM1-208ENST00000617339 TRAK2O60296 914 aa17.96■□□□□ 0.46
SHROOM1-208ENST00000617339 CLCN1P35523 988 aa17.96■□□□□ 0.46
SHROOM1-208ENST00000617339 API5Q9BZZ5 524 aaKnown RBP17.96■□□□□ 0.46
SHROOM1-208ENST00000617339 LGR6Q9HBX8 967 aa17.95■□□□□ 0.46
SHROOM1-208ENST00000617339 EXOC6BQ9Y2D4 811 aa17.95■□□□□ 0.46
SHROOM1-208ENST00000617339 ANTXR1Q9H6X2 564 aa17.95■□□□□ 0.46
SHROOM1-208ENST00000617339 ATP7BP35670 1465 aa17.95■□□□□ 0.46
SHROOM1-208ENST00000617339 HOXC9P31274 260 aa17.95■□□□□ 0.46
SHROOM1-208ENST00000617339 PLEKHG1Q9ULL1 1385 aa17.94■□□□□ 0.46
SHROOM1-208ENST00000617339 TRIM44Q96DX7 344 aaPredicted RBP17.94■□□□□ 0.46
SHROOM1-208ENST00000617339 USP6P35125 1406 aa17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 RBM42Q9BTD8 480 aaKnown RBP17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 KCNQ3O43525 872 aa17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 RRP9O43818 475 aaKnown RBP17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 ZNF853P0CG23 659 aa17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 NBPF6Q5VWK0 638 aa17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 NBPF4Q96M43 638 aa17.93■□□□□ 0.46
SHROOM1-208ENST00000617339 ARID3AQ99856 593 aa17.92■□□□□ 0.46
SHROOM1-208ENST00000617339 CHL1O00533 1208 aa17.92■□□□□ 0.46
SHROOM1-208ENST00000617339 GNAT3A8MTJ3 354 aa17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 HDAC1Q13547 482 aaPredicted RBP17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 AIMP1Q12904 312 aaKnown RBP17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 CHRNA2Q15822 529 aa17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 SMC5Q8IY18 1101 aa17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 IL17REQ8NFR9 667 aa17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 PHAXQ9H814 394 aaKnown RBP17.91■□□□□ 0.46
SHROOM1-208ENST00000617339 PIP4K2AP48426 406 aaPredicted RBP17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 NUCB1Q02818 461 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 ESPNB1AK53 854 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 TPRNQ4KMQ1 711 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 NOL8Q76FK4 1167 aaKnown RBP17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 SIRT1Q96EB6 747 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 ERBB4Q15303 1308 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 TEFQ10587 303 aa17.9■□□□□ 0.46
SHROOM1-208ENST00000617339 CCDC9Q9Y3X0 531 aaKnown RBP17.89■□□□□ 0.45
SHROOM1-208ENST00000617339 ZNF530Q6P9A1 599 aaPredicted RBP17.89■□□□□ 0.45
SHROOM1-208ENST00000617339 GRPEL1Q9HAV7 217 aa17.89■□□□□ 0.45
SHROOM1-208ENST00000617339 KIF13AQ9H1H9 1805 aa17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 HDGFL1Q5TGJ6 251 aa17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 GAS2L2Q8NHY3 880 aa17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 MAP4K4O95819 1239 aaPredicted RBP17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 TBC1D32Q96NH3 1257 aa17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 IL1RAPL2Q9NP60 686 aa17.88■□□□□ 0.45
SHROOM1-208ENST00000617339 FSD2A1L4K1 749 aa17.87■□□□□ 0.45
SHROOM1-208ENST00000617339 STRN4Q9NRL3 753 aa17.87■□□□□ 0.45
SHROOM1-208ENST00000617339 AATKQ6ZMQ8 1374 aa17.87■□□□□ 0.45
SHROOM1-208ENST00000617339 MRE11P49959 708 aa17.87■□□□□ 0.45
SHROOM1-208ENST00000617339 FLT4P35916 1363 aa17.87■□□□□ 0.45
SHROOM1-208ENST00000617339 RILPL2Q969X0 211 aa17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 TRIM6-TRIM34B2RNG4 842 aa17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 HSP90AB1P08238 724 aaKnown RBP17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 JARID2Q92833 1246 aaPredicted RBP17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 PRAMEF22A3QJZ6 481 aa17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 RBM10P98175 930 aaKnown RBP17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 FLIIQ13045 1269 aa17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 CHMP5Q9NZZ3 219 aa17.85■□□□□ 0.45
SHROOM1-208ENST00000617339 GCP02774 474 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 SLC39A6Q13433 755 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 MSH6P52701 1360 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 C1orf141Q5JVX7 400 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 FOXD4L5Q5VV16 416 aaPredicted RBP17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 FOXD4L4Q8WXT5 416 aaPredicted RBP17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 TTC21AQ8NDW8 1320 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 AAMPQ13685 434 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 TBC1D9Q6ZT07 1266 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 NRXN3Q9Y4C0 1643 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 DLC1Q96QB1 1528 aa17.84■□□□□ 0.45
SHROOM1-208ENST00000617339 KRT28Q7Z3Y7 464 aa17.83■□□□□ 0.45
SHROOM1-208ENST00000617339 HSCBQ8IWL3 235 aa17.83■□□□□ 0.45
SHROOM1-208ENST00000617339 EVA1CP58658 441 aa17.83■□□□□ 0.44
SHROOM1-208ENST00000617339 OS9Q13438 667 aaPredicted RBP17.83■□□□□ 0.44
SHROOM1-208ENST00000617339 MED14O60244 1454 aa17.83■□□□□ 0.44
SHROOM1-208ENST00000617339 TAF7Q15545 349 aaPredicted RBP17.83■□□□□ 0.44
SHROOM1-208ENST00000617339 AXIN2Q9Y2T1 843 aa17.83■□□□□ 0.44
SHROOM1-208ENST00000617339 CDK12Q9NYV4 1490 aaPredicted RBP17.82■□□□□ 0.44
SHROOM1-208ENST00000617339 LRRFIP2Q9Y608 721 aaKnown RBP17.82■□□□□ 0.44
SHROOM1-208ENST00000617339 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.82■□□□□ 0.44
SHROOM1-208ENST00000617339 A0A0U1RQG5 324 aaPredicted RBP17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 GCC1Q96CN9 775 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 CEP85Q6P2H3 762 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 CHMP4BQ9H444 224 aaKnown RBP17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 BTBD11A6QL63 1104 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 DTNBO60941 627 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 ARHGAP45Q92619 1136 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 SBNO1A3KN83 1393 aa17.81■□□□□ 0.44
SHROOM1-208ENST00000617339 CCDC30Q5VVM6 783 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 SYTL4Q96C24 671 aaPredicted RBP17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 PODXL2Q9NZ53 605 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 CHPF2Q9P2E5 772 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 ABCC4O15439 1325 aa17.8■□□□□ 0.44
SHROOM1-208ENST00000617339 MYL6BP14649 208 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms