RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PKD1L3Q7Z443 1732 aa18.27■□□□□ 0.52
LINC00540-202ENST00000616974 EXOC5O00471 708 aa18.27■□□□□ 0.52
LINC00540-202ENST00000616974 HMOX1P09601 288 aa18.26■□□□□ 0.51
LINC00540-202ENST00000616974 KCNQ2O43526 872 aa18.26■□□□□ 0.51
LINC00540-202ENST00000616974 ACSBG1Q96GR2 724 aa18.25■□□□□ 0.51
LINC00540-202ENST00000616974 DOT1LQ8TEK3 1739 aa18.25■□□□□ 0.51
LINC00540-202ENST00000616974 SULT6B1Q6IMI4 303 aa18.25■□□□□ 0.51
LINC00540-202ENST00000616974 TOGARAM1Q9Y4F4 1720 aa18.24■□□□□ 0.51
LINC00540-202ENST00000616974 CYP27B1O15528 508 aa18.23■□□□□ 0.51
LINC00540-202ENST00000616974 RAPGEF4Q8WZA2 1011 aa18.23■□□□□ 0.51
LINC00540-202ENST00000616974 CDCA7Q9BWT1 371 aaPredicted RBP18.23■□□□□ 0.51
LINC00540-202ENST00000616974 ZCRB1Q8TBF4 217 aaKnown RBP18.22■□□□□ 0.51
LINC00540-202ENST00000616974 VIRMAQ69YN4 1812 aaKnown RBP18.22■□□□□ 0.51
LINC00540-202ENST00000616974 DIAPH1O60610 1272 aaKnown RBP18.22■□□□□ 0.51
LINC00540-202ENST00000616974 FAM196AQ6ZSG2 479 aa18.21■□□□□ 0.51
LINC00540-202ENST00000616974 PRKRIP1Q9H875 184 aaPredicted RBP18.21■□□□□ 0.51
LINC00540-202ENST00000616974 BTAF1O14981 1849 aa18.2■□□□□ 0.5
LINC00540-202ENST00000616974 ITGB4P16144 1822 aa18.2■□□□□ 0.5
LINC00540-202ENST00000616974 U2SURPO15042 1029 aaKnown RBP18.2■□□□□ 0.5
LINC00540-202ENST00000616974 TATP17735 454 aaPredicted RBP18.2■□□□□ 0.5
LINC00540-202ENST00000616974 KDRP35968 1356 aa18.2■□□□□ 0.5
LINC00540-202ENST00000616974 CCDC184Q52MB2 194 aa18.2■□□□□ 0.5
LINC00540-202ENST00000616974 NHSQ6T4R5 1651 aa18.19■□□□□ 0.5
LINC00540-202ENST00000616974 EN1Q05925 392 aaPredicted RBP18.19■□□□□ 0.5
LINC00540-202ENST00000616974 GOLGB1Q14789 3259 aaKnown RBP18.18■□□□□ 0.5
LINC00540-202ENST00000616974 APBA3O96018 575 aa18.14■□□□□ 0.5
LINC00540-202ENST00000616974 RALBP1Q15311 655 aa18.14■□□□□ 0.5
LINC00540-202ENST00000616974 EZH2Q15910 746 aaKnown RBP18.14■□□□□ 0.5
LINC00540-202ENST00000616974 PHACTR3Q96KR7 559 aa18.14■□□□□ 0.5
LINC00540-202ENST00000616974 PRIM1P49642 420 aaKnown RBP18.14■□□□□ 0.49
LINC00540-202ENST00000616974 SYTL4Q96C24 671 aaPredicted RBP18.14■□□□□ 0.49
LINC00540-202ENST00000616974 MYBBP1AQ9BQG0 1328 aaKnown RBP18.13■□□□□ 0.49
LINC00540-202ENST00000616974 PCDH11XQ9BZA7 1347 aa18.13■□□□□ 0.49
LINC00540-202ENST00000616974 PCDH11YQ9BZA8 1340 aa18.13■□□□□ 0.49
LINC00540-202ENST00000616974 BCL9O00512 1426 aa18.13■□□□□ 0.49
LINC00540-202ENST00000616974 UTRNP46939 3433 aa18.13■□□□□ 0.49
LINC00540-202ENST00000616974 U2AF1L5P0DN76 240 aaPredicted RBP18.13■□□□□ 0.49
LINC00540-202ENST00000616974 U2AF1Q01081 240 aaKnown RBP eCLIP18.13■□□□□ 0.49
LINC00540-202ENST00000616974 PHKG2P15735 406 aa18.12■□□□□ 0.49
LINC00540-202ENST00000616974 KCNQ4P56696 695 aa18.12■□□□□ 0.49
LINC00540-202ENST00000616974 RSPH6AQ9H0K4 717 aa18.12■□□□□ 0.49
LINC00540-202ENST00000616974 DLG5Q8TDM6 1919 aa18.12■□□□□ 0.49
LINC00540-202ENST00000616974 MTHFSDQ2M296 383 aaKnown RBP18.11■□□□□ 0.49
LINC00540-202ENST00000616974 KDM6AO15550 1401 aaPredicted RBP18.11■□□□□ 0.49
LINC00540-202ENST00000616974 PRKAR2BP31323 418 aa18.11■□□□□ 0.49
LINC00540-202ENST00000616974 ZNF530Q6P9A1 599 aaPredicted RBP18.11■□□□□ 0.49
LINC00540-202ENST00000616974 PROM2Q8N271 834 aa18.11■□□□□ 0.49
LINC00540-202ENST00000616974 CFAP53Q96M91 514 aa18.11■□□□□ 0.49
LINC00540-202ENST00000616974 NUP188Q5SRE5 1749 aa18.1■□□□□ 0.49
LINC00540-202ENST00000616974 CAMKK2Q96RR4 588 aa18.1■□□□□ 0.49
LINC00540-202ENST00000616974 BCL11BQ9C0K0 894 aaPredicted RBP18.1■□□□□ 0.49
LINC00540-202ENST00000616974 SCN11AQ9UI33 1791 aa18.1■□□□□ 0.49
LINC00540-202ENST00000616974 RREB1Q92766 1687 aa18.1■□□□□ 0.49
LINC00540-202ENST00000616974 MPRIPQ6WCQ1 1025 aa18.1■□□□□ 0.49
LINC00540-202ENST00000616974 SPG7Q9UQ90 795 aa18.09■□□□□ 0.49
LINC00540-202ENST00000616974 SENP3-EIF4A1A0A087X0R7 540 aa18.08■□□□□ 0.49
LINC00540-202ENST00000616974 SF3B2Q13435 895 aaKnown RBP18.08■□□□□ 0.49
LINC00540-202ENST00000616974 CCDC125Q86Z20 511 aa18.08■□□□□ 0.48
LINC00540-202ENST00000616974 LGR6Q9HBX8 967 aa18.07■□□□□ 0.48
LINC00540-202ENST00000616974 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.07■□□□□ 0.48
LINC00540-202ENST00000616974 IFNL2Q8IZJ0 200 aa18.07■□□□□ 0.48
LINC00540-202ENST00000616974 BAG6P46379 1132 aa18.06■□□□□ 0.48
LINC00540-202ENST00000616974 NKX1-1Q15270 411 aaPredicted RBP18.06■□□□□ 0.48
LINC00540-202ENST00000616974 PLEKHO1Q53GL0 409 aaPredicted RBP18.06■□□□□ 0.48
LINC00540-202ENST00000616974 LY75O60449 1722 aa18.05■□□□□ 0.48
LINC00540-202ENST00000616974 PIGBQ92521 554 aa18.05■□□□□ 0.48
LINC00540-202ENST00000616974 LRRC4BQ9NT99 713 aa18.04■□□□□ 0.48
LINC00540-202ENST00000616974 RGPD3A6NKT7 1758 aaPredicted RBP18.04■□□□□ 0.48
LINC00540-202ENST00000616974 RGPD4Q7Z3J3 1758 aa18.04■□□□□ 0.48
LINC00540-202ENST00000616974 CCDC146Q8IYE0 955 aa18.04■□□□□ 0.48
LINC00540-202ENST00000616974 PLEKHF1Q96S99 279 aa18.04■□□□□ 0.48
LINC00540-202ENST00000616974 NUDCQ9Y266 331 aa18.04■□□□□ 0.48
LINC00540-202ENST00000616974 ADAMTS7Q9UKP4 1686 aa18.03■□□□□ 0.48
LINC00540-202ENST00000616974 AMOTQ4VCS5 1084 aa18.02■□□□□ 0.48
LINC00540-202ENST00000616974 ANO8Q9HCE9 1232 aaPredicted RBP18.02■□□□□ 0.48
LINC00540-202ENST00000616974 ASAP1Q9ULH1 1129 aa18.02■□□□□ 0.47
LINC00540-202ENST00000616974 ADAMTS8Q9UP79 889 aa18.02■□□□□ 0.47
LINC00540-202ENST00000616974 PSDA5PKW4 1024 aaPredicted RBP18.01■□□□□ 0.47
LINC00540-202ENST00000616974 DCTN1Q14203 1278 aa18.01■□□□□ 0.47
LINC00540-202ENST00000616974 TXNRD1Q16881 649 aa18.01■□□□□ 0.47
LINC00540-202ENST00000616974 TAF1LQ8IZX4 1826 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 PLSCR1O15162 318 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 ANP32CO43423 234 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 FCHSD2O94868 740 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 C1orf141Q5JVX7 400 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 NFATC2IPQ8NCF5 419 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 TUBGCP6Q96RT7 1819 aa18■□□□□ 0.47
LINC00540-202ENST00000616974 SIPA1L3O60292 1781 aaPredicted RBP18■□□□□ 0.47
LINC00540-202ENST00000616974 AKAP4Q5JQC9 854 aa17.99■□□□□ 0.47
LINC00540-202ENST00000616974 IL17REQ8NFR9 667 aa17.99■□□□□ 0.47
LINC00540-202ENST00000616974 DCAF5Q96JK2 942 aa17.99■□□□□ 0.47
LINC00540-202ENST00000616974 PDGFDQ9GZP0 370 aaPredicted RBP17.99■□□□□ 0.47
LINC00540-202ENST00000616974 MCM10Q7L590 875 aa17.98■□□□□ 0.47
LINC00540-202ENST00000616974 PAPPAQ13219 1627 aa17.98■□□□□ 0.47
LINC00540-202ENST00000616974 RNMTO43148 476 aaKnown RBP17.98■□□□□ 0.47
LINC00540-202ENST00000616974 THUMPD2Q9BTF0 503 aaKnown RBP17.98■□□□□ 0.47
LINC00540-202ENST00000616974 RRP7AQ9Y3A4 280 aaKnown RBP17.98■□□□□ 0.47
LINC00540-202ENST00000616974 PLEKHG2Q9H7P9 1386 aa17.97■□□□□ 0.47
LINC00540-202ENST00000616974 SMIM5Q71RC9 77 aa17.97■□□□□ 0.47
LINC00540-202ENST00000616974 SLC4A9Q96Q91 983 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms