RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 MON2Q7Z3U7 1717 aa25.08■■□□□ 1.61
TRAPPC3-209ENST00000616395 CCNL1Q9UK58 526 aaPredicted RBP25.08■■□□□ 1.6
TRAPPC3-209ENST00000616395 NSD2O96028 1365 aa25.07■■□□□ 1.6
TRAPPC3-209ENST00000616395 LY75O60449 1722 aa25.07■■□□□ 1.6
TRAPPC3-209ENST00000616395 USP54Q70EL1 1684 aa25.06■■□□□ 1.6
TRAPPC3-209ENST00000616395 CD2APQ9Y5K6 639 aa25.05■■□□□ 1.6
TRAPPC3-209ENST00000616395 DOT1LQ8TEK3 1739 aa25.04■■□□□ 1.6
TRAPPC3-209ENST00000616395 SBNO2Q9Y2G9 1366 aa25.04■■□□□ 1.6
TRAPPC3-209ENST00000616395 LTV1Q96GA3 475 aaPredicted RBP25.02■■□□□ 1.6
TRAPPC3-209ENST00000616395 CD163L1Q9NR16 1453 aa25■■□□□ 1.59
TRAPPC3-209ENST00000616395 CCER1Q8TC90 406 aaPredicted RBP24.99■■□□□ 1.59
TRAPPC3-209ENST00000616395 IP6K1Q92551 441 aa24.99■■□□□ 1.59
TRAPPC3-209ENST00000616395 L3MBTL2Q969R5 705 aa24.98■■□□□ 1.59
TRAPPC3-209ENST00000616395 USP47Q96K76 1375 aa24.98■■□□□ 1.59
TRAPPC3-209ENST00000616395 KIF3CO14782 793 aa24.96■■□□□ 1.59
TRAPPC3-209ENST00000616395 ZCRB1Q8TBF4 217 aaKnown RBP24.96■■□□□ 1.59
TRAPPC3-209ENST00000616395 WWC3Q9ULE0 1092 aa24.96■■□□□ 1.59
TRAPPC3-209ENST00000616395 ROCK2O75116 1388 aaKnown RBP24.96■■□□□ 1.59
TRAPPC3-209ENST00000616395 FAM208AQ9UK61 1670 aaKnown RBP24.95■■□□□ 1.58
TRAPPC3-209ENST00000616395 TMC1Q8TDI8 760 aa24.94■■□□□ 1.58
TRAPPC3-209ENST00000616395 HDGFL2Q7Z4V5 671 aaPredicted RBP24.93■■□□□ 1.58
TRAPPC3-209ENST00000616395 EDC4Q6P2E9 1401 aaKnown RBP24.93■■□□□ 1.58
TRAPPC3-209ENST00000616395 IGSF1Q8N6C5 1336 aa24.92■■□□□ 1.58
TRAPPC3-209ENST00000616395 MEGF6O75095 1541 aa24.92■■□□□ 1.58
TRAPPC3-209ENST00000616395 FLAD1Q8NFF5 587 aa24.91■■□□□ 1.58
TRAPPC3-209ENST00000616395 SLC12A5Q9H2X9 1139 aa24.91■■□□□ 1.58
TRAPPC3-209ENST00000616395 C5P01031 1676 aa24.9■■□□□ 1.58
TRAPPC3-209ENST00000616395 APLP1P51693 650 aa24.9■■□□□ 1.58
TRAPPC3-209ENST00000616395 DNAJC5GQ8N7S2 189 aa24.88■■□□□ 1.57
TRAPPC3-209ENST00000616395 MAP3K19Q56UN5 1328 aa24.87■■□□□ 1.57
TRAPPC3-209ENST00000616395 HOXC9P31274 260 aa24.86■■□□□ 1.57
TRAPPC3-209ENST00000616395 A0A1W2PP64 1363 aa24.86■■□□□ 1.57
TRAPPC3-209ENST00000616395 AMIGO3Q86WK7 504 aa24.86■■□□□ 1.57
TRAPPC3-209ENST00000616395 TERF2IPQ9NYB0 399 aa24.85■■□□□ 1.57
TRAPPC3-209ENST00000616395 RGPD2P0DJD1 1756 aa24.84■■□□□ 1.57
TRAPPC3-209ENST00000616395 PALLDQ8WX93 1383 aa24.84■■□□□ 1.57
TRAPPC3-209ENST00000616395 FBLN1P23142 703 aa24.84■■□□□ 1.57
TRAPPC3-209ENST00000616395 AMPHP49418 695 aa24.84■■□□□ 1.57
TRAPPC3-209ENST00000616395 SMIM5Q71RC9 77 aa24.84■■□□□ 1.57
TRAPPC3-209ENST00000616395 HMGB2P26583 209 aaKnown RBP24.82■■□□□ 1.56
TRAPPC3-209ENST00000616395 AK7Q96M32 723 aa24.82■■□□□ 1.56
TRAPPC3-209ENST00000616395 TAF1LQ8IZX4 1826 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 C4BP0C0L5 1744 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 TOMM70O94826 608 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 PHF14O94880 888 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 NBPF6Q5VWK0 638 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 NBPF4Q96M43 638 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 SIN3AQ96ST3 1273 aa24.81■■□□□ 1.56
TRAPPC3-209ENST00000616395 TOGARAM1Q9Y4F4 1720 aa24.8■■□□□ 1.56
TRAPPC3-209ENST00000616395 USHBP1Q8N6Y0 703 aa24.8■■□□□ 1.56
TRAPPC3-209ENST00000616395 CICQ96RK0 1608 aaPredicted RBP24.79■■□□□ 1.56
TRAPPC3-209ENST00000616395 MPRIPQ6WCQ1 1025 aa24.79■■□□□ 1.56
TRAPPC3-209ENST00000616395 COG3Q96JB2 828 aa24.79■■□□□ 1.56
TRAPPC3-209ENST00000616395 CGNL1Q0VF96 1302 aa24.79■■□□□ 1.56
TRAPPC3-209ENST00000616395 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.78■■□□□ 1.56
TRAPPC3-209ENST00000616395 RAPGEF4Q8WZA2 1011 aa24.78■■□□□ 1.56
TRAPPC3-209ENST00000616395 COL13A1Q5TAT6 717 aaPredicted RBP24.76■■□□□ 1.55
TRAPPC3-209ENST00000616395 PCDH11XQ9BZA7 1347 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 PCDH11YQ9BZA8 1340 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 CLSPNQ9HAW4 1339 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 TATP17735 454 aaPredicted RBP24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 NEUROD1Q13562 356 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 NMRK2Q9NPI5 230 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 NSD3Q9BZ95 1437 aa24.74■■□□□ 1.55
TRAPPC3-209ENST00000616395 UBR3Q6ZT12 1888 aa24.73■■□□□ 1.55
TRAPPC3-209ENST00000616395 CAPN15O75808 1086 aa24.73■■□□□ 1.55
TRAPPC3-209ENST00000616395 SMARCC1Q92922 1105 aaPredicted RBP24.73■■□□□ 1.55
TRAPPC3-209ENST00000616395 RTL1A6NKG5 1358 aa24.73■■□□□ 1.55
TRAPPC3-209ENST00000616395 SSFA2P28290 1259 aa24.72■■□□□ 1.55
TRAPPC3-209ENST00000616395 HTRA3P83110 453 aa24.71■■□□□ 1.55
TRAPPC3-209ENST00000616395 RRS1Q15050 365 aaKnown RBP24.71■■□□□ 1.55
TRAPPC3-209ENST00000616395 CARD11Q9BXL7 1154 aa24.71■■□□□ 1.55
TRAPPC3-209ENST00000616395 PXDNLA1KZ92 1463 aa24.7■■□□□ 1.55
TRAPPC3-209ENST00000616395 CYP27B1O15528 508 aa24.7■■□□□ 1.54
TRAPPC3-209ENST00000616395 WDR90Q96KV7 1748 aa24.7■■□□□ 1.54
TRAPPC3-209ENST00000616395 BCS1LQ9Y276 419 aa24.69■■□□□ 1.54
TRAPPC3-209ENST00000616395 SMG6Q86US8 1419 aaKnown RBP24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 MMP10P09238 476 aa24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 LINC00116Q8NCU8 138 aa24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 PIGBQ92521 554 aa24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 KLRG1Q96E93 195 aa24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 PUS7Q96PZ0 661 aaKnown RBP24.68■■□□□ 1.54
TRAPPC3-209ENST00000616395 ARHGAP27Q6ZUM4 889 aa24.67■■□□□ 1.54
TRAPPC3-209ENST00000616395 JMYQ8N9B5 988 aa24.67■■□□□ 1.54
TRAPPC3-209ENST00000616395 RBM46Q8TBY0 533 aaKnown RBP24.67■■□□□ 1.54
TRAPPC3-209ENST00000616395 LOC102724428A0A0B4J2F2 783 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 A0A0G2JLW4 131 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 GNPATO15228 680 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 SIK1P57059 783 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 ITGB4P16144 1822 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 KIAA1551Q9HCM1 1747 aa24.65■■□□□ 1.54
TRAPPC3-209ENST00000616395 TGFB2P61812 414 aa24.64■■□□□ 1.54
TRAPPC3-209ENST00000616395 TNS4Q8IZW8 715 aa24.63■■□□□ 1.53
TRAPPC3-209ENST00000616395 N4BP2Q86UW6 1770 aaPredicted RBP24.63■■□□□ 1.53
TRAPPC3-209ENST00000616395 MAP2P11137 1827 aaKnown RBP24.63■■□□□ 1.53
TRAPPC3-209ENST00000616395 HSP90AB2PQ58FF8 381 aa24.62■■□□□ 1.53
TRAPPC3-209ENST00000616395 C16orf71Q8IYS4 520 aaPredicted RBP24.62■■□□□ 1.53
TRAPPC3-209ENST00000616395 ITPK1Q13572 414 aa24.61■■□□□ 1.53
TRAPPC3-209ENST00000616395 KIF13BQ9NQT8 1826 aa24.61■■□□□ 1.53
TRAPPC3-209ENST00000616395 INSRP06213 1382 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms