RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 PRR36Q9H6K5 1346 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 USP32Q8NFA0 1604 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 RTF1Q92541 710 aaKnown RBP17.31■□□□□ 0.36
COL6A1-207ENST00000612273 NASPP49321 788 aaPredicted RBP17.31■□□□□ 0.36
COL6A1-207ENST00000612273 ANKRD44Q8N8A2 993 aa17.31■□□□□ 0.36
COL6A1-207ENST00000612273 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
COL6A1-207ENST00000612273 NEK4P51957 841 aa17.3■□□□□ 0.36
COL6A1-207ENST00000612273 CASC1Q6TDU7 716 aa17.3■□□□□ 0.36
COL6A1-207ENST00000612273 ALKQ9UM73 1620 aa17.3■□□□□ 0.36
COL6A1-207ENST00000612273 MAP4K4O95819 1239 aaPredicted RBP17.29■□□□□ 0.36
COL6A1-207ENST00000612273 MPNDQ8N594 471 aa17.29■□□□□ 0.36
COL6A1-207ENST00000612273 DIP2CQ9Y2E4 1556 aa17.29■□□□□ 0.36
COL6A1-207ENST00000612273 ACEP12821 1306 aa17.29■□□□□ 0.36
COL6A1-207ENST00000612273 BRPF1P55201 1214 aaPredicted RBP17.29■□□□□ 0.36
COL6A1-207ENST00000612273 FKBP5Q13451 457 aaPredicted RBP17.29■□□□□ 0.36
COL6A1-207ENST00000612273 RABEP1Q15276 862 aa17.29■□□□□ 0.36
COL6A1-207ENST00000612273 RNF214Q8ND24 703 aa17.28■□□□□ 0.36
COL6A1-207ENST00000612273 ANP32BQ92688 251 aaKnown RBP17.28■□□□□ 0.36
COL6A1-207ENST00000612273 LARP6Q9BRS8 491 aaKnown RBP17.28■□□□□ 0.36
COL6A1-207ENST00000612273 AK9Q5TCS8 1911 aa17.28■□□□□ 0.36
COL6A1-207ENST00000612273 UPF3BQ9BZI7 483 aaKnown RBP17.28■□□□□ 0.36
COL6A1-207ENST00000612273 IL1RAPL2Q9NP60 686 aa17.28■□□□□ 0.36
COL6A1-207ENST00000612273 CLCN1P35523 988 aa17.27■□□□□ 0.36
COL6A1-207ENST00000612273 PTCH1Q13635 1447 aa17.27■□□□□ 0.36
COL6A1-207ENST00000612273 SKOR2Q2VWA4 1001 aaPredicted RBP17.27■□□□□ 0.36
COL6A1-207ENST00000612273 ANO2Q9NQ90 1003 aa17.27■□□□□ 0.36
COL6A1-207ENST00000612273 AMPHP49418 695 aa17.27■□□□□ 0.35
COL6A1-207ENST00000612273 MTHFSDQ2M296 383 aaKnown RBP17.27■□□□□ 0.35
COL6A1-207ENST00000612273 ST18O60284 1047 aa17.26■□□□□ 0.35
COL6A1-207ENST00000612273 ARHGAP31Q2M1Z3 1444 aa17.26■□□□□ 0.35
COL6A1-207ENST00000612273 NCOA3Q9Y6Q9 1424 aa17.26■□□□□ 0.35
COL6A1-207ENST00000612273 CHL1O00533 1208 aa17.25■□□□□ 0.35
COL6A1-207ENST00000612273 CEBPAP49715 358 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-207ENST00000612273 RPAP2Q8IXW5 612 aaPredicted RBP17.25■□□□□ 0.35
COL6A1-207ENST00000612273 CPS1P31327 1500 aa17.25■□□□□ 0.35
COL6A1-207ENST00000612273 NGDNQ8NEJ9 315 aaKnown RBP17.25■□□□□ 0.35
COL6A1-207ENST00000612273 GDPD2Q9HCC8 539 aa17.25■□□□□ 0.35
COL6A1-207ENST00000612273 TTC21BQ7Z4L5 1316 aa17.25■□□□□ 0.35
COL6A1-207ENST00000612273 MED14O60244 1454 aa17.25■□□□□ 0.35
COL6A1-207ENST00000612273 EDC4Q6P2E9 1401 aaKnown RBP17.24■□□□□ 0.35
COL6A1-207ENST00000612273 USHBP1Q8N6Y0 703 aa17.24■□□□□ 0.35
COL6A1-207ENST00000612273 RBM33Q96EV2 1170 aaKnown RBP17.24■□□□□ 0.35
COL6A1-207ENST00000612273 MAP2P11137 1827 aaKnown RBP17.24■□□□□ 0.35
COL6A1-207ENST00000612273 RTL1A6NKG5 1358 aa17.24■□□□□ 0.35
COL6A1-207ENST00000612273 ARID3AQ99856 593 aa17.23■□□□□ 0.35
COL6A1-207ENST00000612273 PNMA6EA0A0J9YXQ4 647 aa17.23■□□□□ 0.35
COL6A1-207ENST00000612273 EIF2S2P20042 333 aaKnown RBP17.23■□□□□ 0.35
COL6A1-207ENST00000612273 STK31Q9BXU1 1019 aa17.23■□□□□ 0.35
COL6A1-207ENST00000612273 NSFL1CQ9UNZ2 370 aaKnown RBP17.23■□□□□ 0.35
COL6A1-207ENST00000612273 MAP3K19Q56UN5 1328 aa17.23■□□□□ 0.35
COL6A1-207ENST00000612273 PDE1AP54750 535 aa17.23■□□□□ 0.35
COL6A1-207ENST00000612273 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 NEO1Q92859 1461 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 ERC2O15083 957 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 HMMRO75330 724 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 REC8O95072 547 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
COL6A1-207ENST00000612273 TMEM131LA2VDJ0 1609 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 PIK3R4Q99570 1358 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 SYCE3A1L190 88 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 KLHL40Q2TBA0 621 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 ZSCAN23Q3MJ62 389 aa17.22■□□□□ 0.35
COL6A1-207ENST00000612273 NUTM1Q86Y26 1132 aa17.21■□□□□ 0.35
COL6A1-207ENST00000612273 NUCB2P80303 420 aa17.21■□□□□ 0.35
COL6A1-207ENST00000612273 LMBRD1Q9NUN5 540 aa17.2■□□□□ 0.34
COL6A1-207ENST00000612273 RBSNQ9H1K0 784 aa17.2■□□□□ 0.34
COL6A1-207ENST00000612273 ANXA1P04083 346 aa17.2■□□□□ 0.34
COL6A1-207ENST00000612273 UNC5CLQ8IV45 518 aa17.2■□□□□ 0.34
COL6A1-207ENST00000612273 ZDHHC9Q9Y397 364 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 LRRFIP2Q9Y608 721 aaKnown RBP17.19■□□□□ 0.34
COL6A1-207ENST00000612273 A2ML1A8K2U0 1454 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 GNAI2P04899 355 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 NLRP6P59044 892 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 TMX3Q96JJ7 454 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 CPSF1Q10570 1443 aaKnown RBP17.19■□□□□ 0.34
COL6A1-207ENST00000612273 CFAP74Q9C0B2 1584 aa17.19■□□□□ 0.34
COL6A1-207ENST00000612273 ATP10DQ9P241 1426 aa17.18■□□□□ 0.34
COL6A1-207ENST00000612273 MSNP26038 577 aaKnown RBP17.18■□□□□ 0.34
COL6A1-207ENST00000612273 GPT2Q8TD30 523 aa17.18■□□□□ 0.34
COL6A1-207ENST00000612273 DDX54Q8TDD1 881 aaKnown RBP17.18■□□□□ 0.34
COL6A1-207ENST00000612273 EYA1Q99502 592 aa17.18■□□□□ 0.34
COL6A1-207ENST00000612273 ROBO2Q9HCK4 1378 aa17.18■□□□□ 0.34
COL6A1-207ENST00000612273 FLIIQ13045 1269 aa17.17■□□□□ 0.34
COL6A1-207ENST00000612273 ATP7BP35670 1465 aa17.17■□□□□ 0.34
COL6A1-207ENST00000612273 HAP1P54257 671 aaPredicted RBP17.16■□□□□ 0.34
COL6A1-207ENST00000612273 HSP90AA2PQ14568 343 aaPredicted RBP17.16■□□□□ 0.34
COL6A1-207ENST00000612273 LRRCC1Q9C099 1032 aa17.16■□□□□ 0.34
COL6A1-207ENST00000612273 LTKP29376 864 aa17.16■□□□□ 0.34
COL6A1-207ENST00000612273 PREX1Q8TCU6 1659 aa17.16■□□□□ 0.34
COL6A1-207ENST00000612273 MX1P20591 662 aa17.16■□□□□ 0.34
COL6A1-207ENST00000612273 PHAXQ9H814 394 aaKnown RBP17.16■□□□□ 0.34
COL6A1-207ENST00000612273 TMEM63CQ9P1W3 806 aa17.16■□□□□ 0.34
COL6A1-207ENST00000612273 IL25Q9H293 177 aa17.15■□□□□ 0.34
COL6A1-207ENST00000612273 CDK12Q9NYV4 1490 aaPredicted RBP17.15■□□□□ 0.34
COL6A1-207ENST00000612273 XPCQ01831 940 aaPredicted RBP17.15■□□□□ 0.34
COL6A1-207ENST00000612273 RBM10P98175 930 aaKnown RBP17.15■□□□□ 0.34
COL6A1-207ENST00000612273 KIAA1211Q6ZU35 1233 aa17.15■□□□□ 0.34
COL6A1-207ENST00000612273 PTPRCP08575 1304 aa17.14■□□□□ 0.33
COL6A1-207ENST00000612273 SURF6O75683 361 aaKnown RBP17.14■□□□□ 0.33
COL6A1-207ENST00000612273 CCDC173Q0VFZ6 552 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms