RNA–Protein interactions for RNA: ENST00000601592.5

USE1-209, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 3

Gene USE1, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-209ENST00000601592 PKD1L3Q7Z443 1732 aa17.34■□□□□ 0.37
USE1-209ENST00000601592 ZCRB1Q8TBF4 217 aaKnown RBP17.34■□□□□ 0.37
USE1-209ENST00000601592 EN1Q05925 392 aaPredicted RBP17.33■□□□□ 0.36
USE1-209ENST00000601592 DDX10Q13206 875 aaKnown RBP17.33■□□□□ 0.36
USE1-209ENST00000601592 ACSBG1Q96GR2 724 aa17.33■□□□□ 0.36
USE1-209ENST00000601592 NCAPD2Q15021 1401 aa17.32■□□□□ 0.36
USE1-209ENST00000601592 BTAF1O14981 1849 aa17.31■□□□□ 0.36
USE1-209ENST00000601592 BCL9O00512 1426 aa17.3■□□□□ 0.36
USE1-209ENST00000601592 IGSF1Q8N6C5 1336 aa17.3■□□□□ 0.36
USE1-209ENST00000601592 PCDH11XQ9BZA7 1347 aa17.29■□□□□ 0.36
USE1-209ENST00000601592 PCDH11YQ9BZA8 1340 aa17.29■□□□□ 0.36
USE1-209ENST00000601592 PTF1AQ7RTS3 328 aa17.29■□□□□ 0.36
USE1-209ENST00000601592 BCL11BQ9C0K0 894 aaPredicted RBP17.29■□□□□ 0.36
USE1-209ENST00000601592 RREB1Q92766 1687 aa17.29■□□□□ 0.36
USE1-209ENST00000601592 RGPD3A6NKT7 1758 aaPredicted RBP17.28■□□□□ 0.36
USE1-209ENST00000601592 RGPD4Q7Z3J3 1758 aa17.28■□□□□ 0.36
USE1-209ENST00000601592 KCNQ2O43526 872 aa17.28■□□□□ 0.36
USE1-209ENST00000601592 EZH2Q15910 746 aaKnown RBP17.28■□□□□ 0.36
USE1-209ENST00000601592 NUP188Q5SRE5 1749 aa17.27■□□□□ 0.36
USE1-209ENST00000601592 DIAPH1O60610 1272 aaKnown RBP17.27■□□□□ 0.36
USE1-209ENST00000601592 IL13P35225 146 aa17.27■□□□□ 0.36
USE1-209ENST00000601592 AEBP1Q8IUX7 1158 aa17.27■□□□□ 0.36
USE1-209ENST00000601592 SYTL4Q96C24 671 aaPredicted RBP17.27■□□□□ 0.36
USE1-209ENST00000601592 SPG7Q9UQ90 795 aa17.27■□□□□ 0.36
USE1-209ENST00000601592 SULT6B1Q6IMI4 303 aa17.26■□□□□ 0.35
USE1-209ENST00000601592 ITGB4P16144 1822 aa17.26■□□□□ 0.35
USE1-209ENST00000601592 COL3A1P02461 1466 aaPredicted RBP17.25■□□□□ 0.35
USE1-209ENST00000601592 TOGARAM1Q9Y4F4 1720 aa17.25■□□□□ 0.35
USE1-209ENST00000601592 PPP2R1AP30153 589 aa17.25■□□□□ 0.35
USE1-209ENST00000601592 CFAP53Q96M91 514 aa17.25■□□□□ 0.35
USE1-209ENST00000601592 PARD3Q8TEW0 1356 aa17.25■□□□□ 0.35
USE1-209ENST00000601592 CAMKK2Q96RR4 588 aa17.24■□□□□ 0.35
USE1-209ENST00000601592 U2SURPO15042 1029 aaKnown RBP17.23■□□□□ 0.35
USE1-209ENST00000601592 CYP27B1O15528 508 aa17.23■□□□□ 0.35
USE1-209ENST00000601592 HMOX1P09601 288 aa17.23■□□□□ 0.35
USE1-209ENST00000601592 VIRMAQ69YN4 1812 aaKnown RBP17.22■□□□□ 0.35
USE1-209ENST00000601592 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
USE1-209ENST00000601592 KDRP35968 1356 aa17.21■□□□□ 0.35
USE1-209ENST00000601592 PLEKHO1Q53GL0 409 aaPredicted RBP17.21■□□□□ 0.35
USE1-209ENST00000601592 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.21■□□□□ 0.35
USE1-209ENST00000601592 PLSCR1O15162 318 aa17.2■□□□□ 0.34
USE1-209ENST00000601592 ZNF530Q6P9A1 599 aaPredicted RBP17.2■□□□□ 0.34
USE1-209ENST00000601592 IFNL2Q8IZJ0 200 aa17.2■□□□□ 0.34
USE1-209ENST00000601592 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
USE1-209ENST00000601592 PLEKHG2Q9H7P9 1386 aa17.18■□□□□ 0.34
USE1-209ENST00000601592 PSDA5PKW4 1024 aaPredicted RBP17.18■□□□□ 0.34
USE1-209ENST00000601592 PHKG2P15735 406 aa17.18■□□□□ 0.34
USE1-209ENST00000601592 AMOTQ4VCS5 1084 aa17.18■□□□□ 0.34
USE1-209ENST00000601592 LY75O60449 1722 aa17.17■□□□□ 0.34
USE1-209ENST00000601592 RALBP1Q15311 655 aa17.17■□□□□ 0.34
USE1-209ENST00000601592 C1orf141Q5JVX7 400 aa17.17■□□□□ 0.34
USE1-209ENST00000601592 MPRIPQ6WCQ1 1025 aa17.17■□□□□ 0.34
USE1-209ENST00000601592 NUDCQ9Y266 331 aa17.17■□□□□ 0.34
USE1-209ENST00000601592 TXNRD1Q16881 649 aa17.16■□□□□ 0.34
USE1-209ENST00000601592 SCN11AQ9UI33 1791 aa17.15■□□□□ 0.34
USE1-209ENST00000601592 R3HDM1Q15032 1099 aaKnown RBP17.15■□□□□ 0.34
USE1-209ENST00000601592 NKX1-1Q15270 411 aaPredicted RBP17.15■□□□□ 0.34
USE1-209ENST00000601592 NBPF14Q5TI25 921 aa17.15■□□□□ 0.34
USE1-209ENST00000601592 HSP90AB1P08238 724 aaKnown RBP17.14■□□□□ 0.33
USE1-209ENST00000601592 U2AF1L5P0DN76 240 aaPredicted RBP17.14■□□□□ 0.33
USE1-209ENST00000601592 U2AF1Q01081 240 aaKnown RBP eCLIP17.14■□□□□ 0.33
USE1-209ENST00000601592 PROM2Q8N271 834 aa17.13■□□□□ 0.33
USE1-209ENST00000601592 TMOD3Q9NYL9 352 aa17.13■□□□□ 0.33
USE1-209ENST00000601592 MYBBP1AQ9BQG0 1328 aaKnown RBP17.12■□□□□ 0.33
USE1-209ENST00000601592 KDM6AO15550 1401 aaPredicted RBP17.12■□□□□ 0.33
USE1-209ENST00000601592 PRKAR2BP31323 418 aa17.11■□□□□ 0.33
USE1-209ENST00000601592 DCAF5Q96JK2 942 aa17.11■□□□□ 0.33
USE1-209ENST00000601592 KCNQ4P56696 695 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 MTHFSDQ2M296 383 aaKnown RBP17.1■□□□□ 0.33
USE1-209ENST00000601592 AKAP4Q5JQC9 854 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 PIGBQ92521 554 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
USE1-209ENST00000601592 PALLDQ8WX93 1383 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 PAPPAQ13219 1627 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 C5P01031 1676 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 TAF1LQ8IZX4 1826 aa17.1■□□□□ 0.33
USE1-209ENST00000601592 CABP4P57796 275 aa17.09■□□□□ 0.33
USE1-209ENST00000601592 RSPH6AQ9H0K4 717 aa17.09■□□□□ 0.33
USE1-209ENST00000601592 STK32BQ9NY57 414 aa17.09■□□□□ 0.33
USE1-209ENST00000601592 CCNL1Q9UK58 526 aaPredicted RBP17.09■□□□□ 0.33
USE1-209ENST00000601592 TUBGCP6Q96RT7 1819 aa17.08■□□□□ 0.33
USE1-209ENST00000601592 SLC27A3Q5K4L6 730 aa17.08■□□□□ 0.32
USE1-209ENST00000601592 SMARCC1Q92922 1105 aaPredicted RBP17.08■□□□□ 0.32
USE1-209ENST00000601592 PRKRIP1Q9H875 184 aaPredicted RBP17.08■□□□□ 0.32
USE1-209ENST00000601592 LRRC4BQ9NT99 713 aa17.08■□□□□ 0.32
USE1-209ENST00000601592 ERVV-2B6SEH9 535 aa17.07■□□□□ 0.32
USE1-209ENST00000601592 GAS2L2Q8NHY3 880 aa17.07■□□□□ 0.32
USE1-209ENST00000601592 DLG5Q8TDM6 1919 aa17.06■□□□□ 0.32
USE1-209ENST00000601592 MAP3K5Q99683 1374 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 FCHSD2O94868 740 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 NEFMP07197 916 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 PHACTR3Q96KR7 559 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 ASAP1Q9ULH1 1129 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 CASZ1Q86V15 1759 aa17.05■□□□□ 0.32
USE1-209ENST00000601592 ADAMTS7Q9UKP4 1686 aa17.04■□□□□ 0.32
USE1-209ENST00000601592 SLC15A2Q16348 729 aa17.04■□□□□ 0.32
USE1-209ENST00000601592 LGR6Q9HBX8 967 aa17.04■□□□□ 0.32
USE1-209ENST00000601592 RNMTO43148 476 aaKnown RBP17.03■□□□□ 0.32
USE1-209ENST00000601592 ZNF827Q17R98 1081 aa17.03■□□□□ 0.32
USE1-209ENST00000601592 NFATC2IPQ8NCF5 419 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms