RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 DEFB132Q7Z7B7 95 aa22.25■■□□□ 1.15
USHBP1-210ENST00000600286 MRS2Q9HD23 443 aa22.24■■□□□ 1.15
USHBP1-210ENST00000600286 PARP4Q9UKK3 1724 aaKnown RBP22.23■■□□□ 1.15
USHBP1-210ENST00000600286 HMOX1P09601 288 aa22.22■■□□□ 1.15
USHBP1-210ENST00000600286 SPG7Q9UQ90 795 aa22.22■■□□□ 1.15
USHBP1-210ENST00000600286 WNK3Q9BYP7 1800 aa22.22■■□□□ 1.15
USHBP1-210ENST00000600286 FCHSD2O94868 740 aa22.21■■□□□ 1.15
USHBP1-210ENST00000600286 PLEKHO1Q53GL0 409 aaPredicted RBP22.21■■□□□ 1.15
USHBP1-210ENST00000600286 ZCRB1Q8TBF4 217 aaKnown RBP22.21■■□□□ 1.15
USHBP1-210ENST00000600286 DISP2A7MBM2 1401 aa22.21■■□□□ 1.15
USHBP1-210ENST00000600286 COL3A1P02461 1466 aaPredicted RBP22.21■■□□□ 1.15
USHBP1-210ENST00000600286 AMOTQ4VCS5 1084 aa22.2■■□□□ 1.14
USHBP1-210ENST00000600286 CCER2I3L3R5 266 aa22.18■■□□□ 1.14
USHBP1-210ENST00000600286 FAM182BQ5T319 152 aa22.18■■□□□ 1.14
USHBP1-210ENST00000600286 AEBP1Q8IUX7 1158 aa22.18■■□□□ 1.14
USHBP1-210ENST00000600286 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.18■■□□□ 1.14
USHBP1-210ENST00000600286 NCAPD2Q15021 1401 aa22.16■■□□□ 1.14
USHBP1-210ENST00000600286 KDRP35968 1356 aa22.16■■□□□ 1.14
USHBP1-210ENST00000600286 PLEKHG2Q9H7P9 1386 aa22.16■■□□□ 1.14
USHBP1-210ENST00000600286 DDX54Q8TDD1 881 aaKnown RBP22.16■■□□□ 1.14
USHBP1-210ENST00000600286 PRKAR2BP31323 418 aa22.14■■□□□ 1.13
USHBP1-210ENST00000600286 MIER1Q8N108 512 aa22.14■■□□□ 1.13
USHBP1-210ENST00000600286 SBF2Q86WG5 1849 aa22.14■■□□□ 1.13
USHBP1-210ENST00000600286 LRRC37A3O60309 1634 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 PCDH11XQ9BZA7 1347 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 PCDH11YQ9BZA8 1340 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 MAPK8IP3Q9UPT6 1336 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 SF3B2Q13435 895 aaKnown RBP22.13■■□□□ 1.13
USHBP1-210ENST00000600286 C1orf141Q5JVX7 400 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 RSPH6AQ9H0K4 717 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 RREB1Q92766 1687 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 OVOS2A0A0G2JMS6 1433 aa22.13■■□□□ 1.13
USHBP1-210ENST00000600286 LRP5O75197 1615 aa22.12■■□□□ 1.13
USHBP1-210ENST00000600286 MEGF6O75095 1541 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 CCDC184Q52MB2 194 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 IFNL2Q8IZJ0 200 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 GAS2L2Q8NHY3 880 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 ADAMTS8Q9UP79 889 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 RGPD2P0DJD1 1756 aa22.11■■□□□ 1.13
USHBP1-210ENST00000600286 HSP90AB1P08238 724 aaKnown RBP22.1■■□□□ 1.13
USHBP1-210ENST00000600286 ZNF530Q6P9A1 599 aaPredicted RBP22.1■■□□□ 1.13
USHBP1-210ENST00000600286 FAM196AQ6ZSG2 479 aa22.1■■□□□ 1.13
USHBP1-210ENST00000600286 PNISRQ8TF01 805 aaKnown RBP22.1■■□□□ 1.13
USHBP1-210ENST00000600286 TNS2Q63HR2 1409 aa22.09■■□□□ 1.13
USHBP1-210ENST00000600286 BAG6P46379 1132 aa22.09■■□□□ 1.13
USHBP1-210ENST00000600286 FAM9BQ8IZU0 186 aa22.08■■□□□ 1.13
USHBP1-210ENST00000600286 MARCH10Q8NA82 808 aaPredicted RBP22.08■■□□□ 1.13
USHBP1-210ENST00000600286 NUP188Q5SRE5 1749 aa22.07■■□□□ 1.12
USHBP1-210ENST00000600286 EN1Q05925 392 aaPredicted RBP22.07■■□□□ 1.12
USHBP1-210ENST00000600286 RUNDC1Q96C34 613 aa22.07■■□□□ 1.12
USHBP1-210ENST00000600286 AKAP4Q5JQC9 854 aa22.06■■□□□ 1.12
USHBP1-210ENST00000600286 CAMKK2Q96RR4 588 aa22.06■■□□□ 1.12
USHBP1-210ENST00000600286 RGPD3A6NKT7 1758 aaPredicted RBP22.05■■□□□ 1.12
USHBP1-210ENST00000600286 RGPD4Q7Z3J3 1758 aa22.05■■□□□ 1.12
USHBP1-210ENST00000600286 MTHFSDQ2M296 383 aaKnown RBP22.05■■□□□ 1.12
USHBP1-210ENST00000600286 CYP27B1O15528 508 aa22.04■■□□□ 1.12
USHBP1-210ENST00000600286 PHKG2P15735 406 aa22.04■■□□□ 1.12
USHBP1-210ENST00000600286 PHACTR3Q96KR7 559 aa22.04■■□□□ 1.12
USHBP1-210ENST00000600286 TRIM37O94972 964 aa22.03■■□□□ 1.12
USHBP1-210ENST00000600286 CCDC146Q8IYE0 955 aa22.03■■□□□ 1.12
USHBP1-210ENST00000600286 RTF1Q92541 710 aaKnown RBP22.03■■□□□ 1.12
USHBP1-210ENST00000600286 PLEKHF1Q96S99 279 aa22.03■■□□□ 1.12
USHBP1-210ENST00000600286 GNAT3A8MTJ3 354 aa22.02■■□□□ 1.12
USHBP1-210ENST00000600286 DCAF5Q96JK2 942 aa22.02■■□□□ 1.12
USHBP1-210ENST00000600286 NKX1-1Q15270 411 aaPredicted RBP22.01■■□□□ 1.11
USHBP1-210ENST00000600286 EZH2Q15910 746 aaKnown RBP22.01■■□□□ 1.11
USHBP1-210ENST00000600286 NFE2L2Q16236 605 aa22■■□□□ 1.11
USHBP1-210ENST00000600286 BCL9O00512 1426 aa21.99■■□□□ 1.11
USHBP1-210ENST00000600286 LMOD3Q0VAK6 560 aa21.99■■□□□ 1.11
USHBP1-210ENST00000600286 HTATSF1O43719 755 aaKnown RBP21.98■■□□□ 1.11
USHBP1-210ENST00000600286 SYTL4Q96C24 671 aaPredicted RBP21.98■■□□□ 1.11
USHBP1-210ENST00000600286 RIPK4P57078 832 aa21.97■■□□□ 1.11
USHBP1-210ENST00000600286 MPRIPQ6WCQ1 1025 aa21.97■■□□□ 1.11
USHBP1-210ENST00000600286 ACSBG1Q96GR2 724 aa21.97■■□□□ 1.11
USHBP1-210ENST00000600286 MAP3K5Q99683 1374 aa21.97■■□□□ 1.11
USHBP1-210ENST00000600286 PSDA5PKW4 1024 aaPredicted RBP21.96■■□□□ 1.11
USHBP1-210ENST00000600286 ERVV-2B6SEH9 535 aa21.96■■□□□ 1.11
USHBP1-210ENST00000600286 TMPOP42166 694 aaKnown RBP21.96■■□□□ 1.11
USHBP1-210ENST00000600286 APBA3O96018 575 aa21.95■■□□□ 1.1
USHBP1-210ENST00000600286 CABP4P57796 275 aa21.95■■□□□ 1.1
USHBP1-210ENST00000600286 NEUROD2Q15784 382 aa21.95■■□□□ 1.1
USHBP1-210ENST00000600286 BCL11BQ9C0K0 894 aaPredicted RBP21.95■■□□□ 1.1
USHBP1-210ENST00000600286 PKD1L3Q7Z443 1732 aa21.94■■□□□ 1.1
USHBP1-210ENST00000600286 APAF1O14727 1248 aa21.94■■□□□ 1.1
USHBP1-210ENST00000600286 PRIM1P49642 420 aaKnown RBP21.94■■□□□ 1.1
USHBP1-210ENST00000600286 TEFQ10587 303 aa21.94■■□□□ 1.1
USHBP1-210ENST00000600286 TMOD3Q9NYL9 352 aa21.94■■□□□ 1.1
USHBP1-210ENST00000600286 RNMTO43148 476 aaKnown RBP21.93■■□□□ 1.1
USHBP1-210ENST00000600286 NGEFQ8N5V2 710 aa21.92■■□□□ 1.1
USHBP1-210ENST00000600286 RRP7AQ9Y3A4 280 aaKnown RBP21.91■■□□□ 1.1
USHBP1-210ENST00000600286 R3HDM1Q15032 1099 aaKnown RBP21.9■■□□□ 1.1
USHBP1-210ENST00000600286 PTF1AQ7RTS3 328 aa21.9■■□□□ 1.1
USHBP1-210ENST00000600286 LGR6Q9HBX8 967 aa21.9■■□□□ 1.1
USHBP1-210ENST00000600286 KCNQ2O43526 872 aa21.89■■□□□ 1.09
USHBP1-210ENST00000600286 CALD1Q05682 793 aaKnown RBP21.88■■□□□ 1.09
USHBP1-210ENST00000600286 NCBP3Q53F19 620 aaKnown RBP21.88■■□□□ 1.09
USHBP1-210ENST00000600286 MCM10Q7L590 875 aa21.88■■□□□ 1.09
USHBP1-210ENST00000600286 NFATC2IPQ8NCF5 419 aa21.88■■□□□ 1.09
USHBP1-210ENST00000600286 IL17REQ8NFR9 667 aa21.88■■□□□ 1.09
USHBP1-210ENST00000600286 SLC52A2Q9HAB3 445 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms