RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 USP31Q70CQ4 1352 aa25.55■■□□□ 1.68
SSBP4-207ENST00000600244 CAPN15O75808 1086 aa25.54■■□□□ 1.68
SSBP4-207ENST00000600244 EVC2Q86UK5 1308 aa25.54■■□□□ 1.68
SSBP4-207ENST00000600244 PRELPP51888 382 aa25.53■■□□□ 1.68
SSBP4-207ENST00000600244 JMYQ8N9B5 988 aa25.52■■□□□ 1.68
SSBP4-207ENST00000600244 IGSF1Q8N6C5 1336 aa25.52■■□□□ 1.68
SSBP4-207ENST00000600244 KTN1Q86UP2 1357 aaKnown RBP25.5■■□□□ 1.67
SSBP4-207ENST00000600244 FLAD1Q8NFF5 587 aa25.49■■□□□ 1.67
SSBP4-207ENST00000600244 KLRG1Q96E93 195 aa25.48■■□□□ 1.67
SSBP4-207ENST00000600244 WWC3Q9ULE0 1092 aa25.48■■□□□ 1.67
SSBP4-207ENST00000600244 DOT1LQ8TEK3 1739 aa25.48■■□□□ 1.67
SSBP4-207ENST00000600244 TNS4Q8IZW8 715 aa25.47■■□□□ 1.67
SSBP4-207ENST00000600244 LTN1O94822 1766 aa25.46■■□□□ 1.67
SSBP4-207ENST00000600244 USP54Q70EL1 1684 aa25.46■■□□□ 1.67
SSBP4-207ENST00000600244 CICQ96RK0 1608 aaPredicted RBP25.45■■□□□ 1.66
SSBP4-207ENST00000600244 USP47Q96K76 1375 aa25.44■■□□□ 1.66
SSBP4-207ENST00000600244 WDR90Q96KV7 1748 aa25.44■■□□□ 1.66
SSBP4-207ENST00000600244 NME9Q86XW9 330 aa25.44■■□□□ 1.66
SSBP4-207ENST00000600244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.44■■□□□ 1.66
SSBP4-207ENST00000600244 HTRA3P83110 453 aa25.42■■□□□ 1.66
SSBP4-207ENST00000600244 ZCRB1Q8TBF4 217 aaKnown RBP25.41■■□□□ 1.66
SSBP4-207ENST00000600244 IP6K1Q92551 441 aa25.41■■□□□ 1.66
SSBP4-207ENST00000600244 NMRK2Q9NPI5 230 aa25.41■■□□□ 1.66
SSBP4-207ENST00000600244 MON2Q7Z3U7 1717 aa25.4■■□□□ 1.66
SSBP4-207ENST00000600244 RBM46Q8TBY0 533 aaKnown RBP25.4■■□□□ 1.66
SSBP4-207ENST00000600244 C5P01031 1676 aa25.39■■□□□ 1.66
SSBP4-207ENST00000600244 HMGB2P26583 209 aaKnown RBP25.39■■□□□ 1.66
SSBP4-207ENST00000600244 SBNO2Q9Y2G9 1366 aa25.39■■□□□ 1.65
SSBP4-207ENST00000600244 AMIGO3Q86WK7 504 aa25.38■■□□□ 1.65
SSBP4-207ENST00000600244 LTV1Q96GA3 475 aaPredicted RBP25.36■■□□□ 1.65
SSBP4-207ENST00000600244 FAM208AQ9UK61 1670 aaKnown RBP25.35■■□□□ 1.65
SSBP4-207ENST00000600244 TAF1LQ8IZX4 1826 aa25.35■■□□□ 1.65
SSBP4-207ENST00000600244 CD163L1Q9NR16 1453 aa25.34■■□□□ 1.65
SSBP4-207ENST00000600244 FSTL1Q12841 308 aa25.33■■□□□ 1.65
SSBP4-207ENST00000600244 MEGF6O75095 1541 aa25.32■■□□□ 1.64
SSBP4-207ENST00000600244 TOGARAM1Q9Y4F4 1720 aa25.32■■□□□ 1.64
SSBP4-207ENST00000600244 SMIM5Q71RC9 77 aa25.31■■□□□ 1.64
SSBP4-207ENST00000600244 PALLDQ8WX93 1383 aa25.31■■□□□ 1.64
SSBP4-207ENST00000600244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.3■■□□□ 1.64
SSBP4-207ENST00000600244 C4BP0C0L5 1744 aa25.29■■□□□ 1.64
SSBP4-207ENST00000600244 AK7Q96M32 723 aa25.29■■□□□ 1.64
SSBP4-207ENST00000600244 PCNTO95613 3336 aa25.29■■□□□ 1.64
SSBP4-207ENST00000600244 PXDNLA1KZ92 1463 aa25.28■■□□□ 1.64
SSBP4-207ENST00000600244 SLC34A2O95436 690 aa25.27■■□□□ 1.64
SSBP4-207ENST00000600244 UBR3Q6ZT12 1888 aa25.27■■□□□ 1.64
SSBP4-207ENST00000600244 PHF14O94880 888 aa25.26■■□□□ 1.63
SSBP4-207ENST00000600244 ARHGAP27Q6ZUM4 889 aa25.26■■□□□ 1.63
SSBP4-207ENST00000600244 C16orf71Q8IYS4 520 aaPredicted RBP25.26■■□□□ 1.63
SSBP4-207ENST00000600244 SSFA2P28290 1259 aa25.25■■□□□ 1.63
SSBP4-207ENST00000600244 HOXC9P31274 260 aa25.25■■□□□ 1.63
SSBP4-207ENST00000600244 TGFB2P61812 414 aa25.25■■□□□ 1.63
SSBP4-207ENST00000600244 BCS1LQ9Y276 419 aa25.25■■□□□ 1.63
SSBP4-207ENST00000600244 KIAA1551Q9HCM1 1747 aa25.24■■□□□ 1.63
SSBP4-207ENST00000600244 EDC4Q6P2E9 1401 aaKnown RBP25.24■■□□□ 1.63
SSBP4-207ENST00000600244 NSD3Q9BZ95 1437 aa25.24■■□□□ 1.63
SSBP4-207ENST00000600244 CGNL1Q0VF96 1302 aa25.24■■□□□ 1.63
SSBP4-207ENST00000600244 RGPD2P0DJD1 1756 aa25.23■■□□□ 1.63
SSBP4-207ENST00000600244 MAP3K19Q56UN5 1328 aa25.23■■□□□ 1.63
SSBP4-207ENST00000600244 KIF13BQ9NQT8 1826 aa25.22■■□□□ 1.63
SSBP4-207ENST00000600244 MPRIPQ6WCQ1 1025 aa25.22■■□□□ 1.63
SSBP4-207ENST00000600244 SMARCC1Q92922 1105 aaPredicted RBP25.22■■□□□ 1.63
SSBP4-207ENST00000600244 A0A0G2JLW4 131 aa25.21■■□□□ 1.63
SSBP4-207ENST00000600244 NBPF6Q5VWK0 638 aa25.21■■□□□ 1.63
SSBP4-207ENST00000600244 HDGFL2Q7Z4V5 671 aaPredicted RBP25.21■■□□□ 1.63
SSBP4-207ENST00000600244 NBPF4Q96M43 638 aa25.21■■□□□ 1.63
SSBP4-207ENST00000600244 SLC12A5Q9H2X9 1139 aa25.21■■□□□ 1.63
SSBP4-207ENST00000600244 HSPA1AP0DMV8 641 aaKnown RBP25.2■■□□□ 1.62
SSBP4-207ENST00000600244 HSPA1BP0DMV9 641 aaKnown RBP25.2■■□□□ 1.62
SSBP4-207ENST00000600244 C9orf131Q5VYM1 1079 aa25.2■■□□□ 1.62
SSBP4-207ENST00000600244 MMP10P09238 476 aa25.19■■□□□ 1.62
SSBP4-207ENST00000600244 C10orf71Q711Q0 1435 aa25.19■■□□□ 1.62
SSBP4-207ENST00000600244 PLEKHG2Q9H7P9 1386 aa25.18■■□□□ 1.62
SSBP4-207ENST00000600244 N4BP2Q86UW6 1770 aaPredicted RBP25.18■■□□□ 1.62
SSBP4-207ENST00000600244 FBLN1P23142 703 aa25.17■■□□□ 1.62
SSBP4-207ENST00000600244 AMPHP49418 695 aa25.17■■□□□ 1.62
SSBP4-207ENST00000600244 LINC00116Q8NCU8 138 aa25.17■■□□□ 1.62
SSBP4-207ENST00000600244 TMC1Q8TDI8 760 aa25.17■■□□□ 1.62
SSBP4-207ENST00000600244 RAPGEF4Q8WZA2 1011 aa25.16■■□□□ 1.62
SSBP4-207ENST00000600244 L3MBTL2Q969R5 705 aa25.16■■□□□ 1.62
SSBP4-207ENST00000600244 RRAGCQ9HB90 399 aa25.16■■□□□ 1.62
SSBP4-207ENST00000600244 KDM2BQ8NHM5 1336 aa25.15■■□□□ 1.62
SSBP4-207ENST00000600244 FCHSD2O94868 740 aa25.15■■□□□ 1.62
SSBP4-207ENST00000600244 KCPQ6ZWJ8 1503 aa25.15■■□□□ 1.62
SSBP4-207ENST00000600244 PCDH11XQ9BZA7 1347 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 PCDH11YQ9BZA8 1340 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 DPEP1P16444 411 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 USHBP1Q8N6Y0 703 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 PIGBQ92521 554 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 TERF2IPQ9NYB0 399 aa25.14■■□□□ 1.62
SSBP4-207ENST00000600244 A0A1W2PP64 1363 aa25.14■■□□□ 1.61
SSBP4-207ENST00000600244 MAP2P11137 1827 aaKnown RBP25.14■■□□□ 1.61
SSBP4-207ENST00000600244 CYP27B1O15528 508 aa25.13■■□□□ 1.61
SSBP4-207ENST00000600244 TATP17735 454 aaPredicted RBP25.13■■□□□ 1.61
SSBP4-207ENST00000600244 SMC1BQ8NDV3 1235 aa25.13■■□□□ 1.61
SSBP4-207ENST00000600244 ROCK2O75116 1388 aaKnown RBP25.13■■□□□ 1.61
SSBP4-207ENST00000600244 LOC102724428A0A0B4J2F2 783 aa25.12■■□□□ 1.61
SSBP4-207ENST00000600244 SIK1P57059 783 aa25.12■■□□□ 1.61
SSBP4-207ENST00000600244 GNPATO15228 680 aa25.11■■□□□ 1.61
SSBP4-207ENST00000600244 KCNA3P22001 575 aa25.11■■□□□ 1.61
SSBP4-207ENST00000600244 ITGB4P16144 1822 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms