RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZSCAN31Q96LW9 406 aaPredicted RBP24.15■■□□□ 1.46
UPF1-207ENST00000599848 BCL11BQ9C0K0 894 aaPredicted RBP24.15■■□□□ 1.46
UPF1-207ENST00000599848 CCDC141Q6ZP82 1450 aa24.15■■□□□ 1.46
UPF1-207ENST00000599848 TRAF1Q13077 416 aa24.15■■□□□ 1.46
UPF1-207ENST00000599848 PPP4R3BQ5MIZ7 849 aa24.15■■□□□ 1.46
UPF1-207ENST00000599848 MYO1BO43795 1136 aa24.14■■□□□ 1.46
UPF1-207ENST00000599848 DZIP1Q86YF9 867 aaKnown RBP24.14■■□□□ 1.46
UPF1-207ENST00000599848 IMMTQ16891 758 aaKnown RBP24.14■■□□□ 1.45
UPF1-207ENST00000599848 SLC5A1P13866 664 aa24.14■■□□□ 1.45
UPF1-207ENST00000599848 CCDC196A0A1B0GTZ2 297 aa24.14■■□□□ 1.45
UPF1-207ENST00000599848 HMGXB3Q12766 1538 aa24.13■■□□□ 1.45
UPF1-207ENST00000599848 AACSQ86V21 672 aa24.13■■□□□ 1.45
UPF1-207ENST00000599848 MSH6P52701 1360 aa24.13■■□□□ 1.45
UPF1-207ENST00000599848 TOPBP1Q92547 1522 aa24.12■■□□□ 1.45
UPF1-207ENST00000599848 SLC12A5Q9H2X9 1139 aa24.12■■□□□ 1.45
UPF1-207ENST00000599848 NBPF8Q3BBV2 869 aa24.12■■□□□ 1.45
UPF1-207ENST00000599848 NBPF14Q5TI25 921 aa24.12■■□□□ 1.45
UPF1-207ENST00000599848 RAB34Q9BZG1 259 aa24.12■■□□□ 1.45
UPF1-207ENST00000599848 RPAP2Q8IXW5 612 aaPredicted RBP24.12■■□□□ 1.45
UPF1-207ENST00000599848 CDC5LQ99459 802 aaKnown RBP24.11■■□□□ 1.45
UPF1-207ENST00000599848 ADAMTS8Q9UP79 889 aa24.11■■□□□ 1.45
UPF1-207ENST00000599848 SIL1Q9H173 461 aa24.11■■□□□ 1.45
UPF1-207ENST00000599848 MAP3K12Q12852 859 aa24.11■■□□□ 1.45
UPF1-207ENST00000599848 MKNK2Q9HBH9 465 aa24.11■■□□□ 1.45
UPF1-207ENST00000599848 RUSC2Q8N2Y8 1516 aa24.1■■□□□ 1.45
UPF1-207ENST00000599848 ST5P78524 1137 aa24.1■■□□□ 1.45
UPF1-207ENST00000599848 SRGAP3O43295 1099 aa24.1■■□□□ 1.45
UPF1-207ENST00000599848 RNF41Q9H4P4 317 aaPredicted RBP24.1■■□□□ 1.45
UPF1-207ENST00000599848 NEK4P51957 841 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 SPTY2D1Q68D10 685 aaPredicted RBP24.09■■□□□ 1.45
UPF1-207ENST00000599848 BLOC1S2Q6QNY1 142 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 SPDYE4A6NLX3 237 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 KIF20AO95235 890 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 NFE2L2Q16236 605 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 IFT57Q9NWB7 429 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 PANK1Q8TE04 598 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 TANGO6Q9C0B7 1094 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 IDH1O75874 414 aaKnown RBP24.09■■□□□ 1.45
UPF1-207ENST00000599848 DEF6Q9H4E7 631 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 PHAXQ9H814 394 aaKnown RBP24.09■■□□□ 1.45
UPF1-207ENST00000599848 ABCF2Q9UG63 623 aa24.09■■□□□ 1.45
UPF1-207ENST00000599848 IFIT5Q13325 482 aaKnown RBP24.08■■□□□ 1.45
UPF1-207ENST00000599848 PPP1R42Q7Z4L9 355 aa24.08■■□□□ 1.45
UPF1-207ENST00000599848 RAB11FIP3O75154 756 aa24.08■■□□□ 1.45
UPF1-207ENST00000599848 SMARCC1Q92922 1105 aaPredicted RBP24.08■■□□□ 1.45
UPF1-207ENST00000599848 POLD1P28340 1107 aa24.08■■□□□ 1.44
UPF1-207ENST00000599848 FMNL2Q96PY5 1086 aa24.08■■□□□ 1.44
UPF1-207ENST00000599848 CABP5Q9NP86 173 aa24.08■■□□□ 1.44
UPF1-207ENST00000599848 CBFA2T2O43439 604 aa24.08■■□□□ 1.44
UPF1-207ENST00000599848 PPFIBP1Q86W92 1011 aa24.08■■□□□ 1.44
UPF1-207ENST00000599848 C16orf71Q8IYS4 520 aaPredicted RBP24.07■■□□□ 1.44
UPF1-207ENST00000599848 XPCQ01831 940 aaPredicted RBP24.07■■□□□ 1.44
UPF1-207ENST00000599848 ANKRD18BA2A2Z9 1011 aa24.07■■□□□ 1.44
UPF1-207ENST00000599848 SSBP05455 408 aaKnown RBP eCLIP24.06■■□□□ 1.44
UPF1-207ENST00000599848 ZNF444Q8N0Y2 327 aaPredicted RBP24.06■■□□□ 1.44
UPF1-207ENST00000599848 EZRP15311 586 aaKnown RBP24.06■■□□□ 1.44
UPF1-207ENST00000599848 HDAC9Q9UKV0 1011 aa24.06■■□□□ 1.44
UPF1-207ENST00000599848 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
UPF1-207ENST00000599848 DDX46Q7L014 1031 aaKnown RBP24.06■■□□□ 1.44
UPF1-207ENST00000599848 CCDC150Q8NCX0 1101 aa24.06■■□□□ 1.44
UPF1-207ENST00000599848 U3KPZ7 1027 aaPredicted RBP24.06■■□□□ 1.44
UPF1-207ENST00000599848 UBAP1LF5GYI3 381 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 WDR78Q5VTH9 848 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 DENND4BO75064 1496 aaPredicted RBP24.05■■□□□ 1.44
UPF1-207ENST00000599848 NEFHP12036 1026 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 NF2P35240 595 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 HLA-DOAP06340 250 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 SEPT7Q16181 437 aaKnown RBP24.05■■□□□ 1.44
UPF1-207ENST00000599848 AMOTL2Q9Y2J4 779 aa24.05■■□□□ 1.44
UPF1-207ENST00000599848 TAF7Q15545 349 aaPredicted RBP24.04■■□□□ 1.44
UPF1-207ENST00000599848 HYPKQ9NX55 129 aa24.04■■□□□ 1.44
UPF1-207ENST00000599848 TRMT112Q9UI30 125 aaKnown RBP24.04■■□□□ 1.44
UPF1-207ENST00000599848 CFAP45Q9UL16 551 aa24.04■■□□□ 1.44
UPF1-207ENST00000599848 TEX14Q8IWB6 1497 aa24.04■■□□□ 1.44
UPF1-207ENST00000599848 BAG3O95817 575 aa24.04■■□□□ 1.44
UPF1-207ENST00000599848 CTCFLQ8NI51 663 aaPredicted RBP24.04■■□□□ 1.44
UPF1-207ENST00000599848 NOB1Q9ULX3 412 aaKnown RBP24.04■■□□□ 1.44
UPF1-207ENST00000599848 ADGRL1O94910 1474 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 RFC4P35249 363 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 IQCA1Q86XH1 822 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 CEP57L1Q8IYX8 460 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 DNMBPQ6XZF7 1577 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 CCDC12Q8WUD4 166 aaPredicted RBP24.03■■□□□ 1.44
UPF1-207ENST00000599848 WDR33Q9C0J8 1336 aaKnown RBP24.03■■□□□ 1.44
UPF1-207ENST00000599848 B4DLN1 442 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 PATL2C9JE40 543 aaKnown RBP24.03■■□□□ 1.44
UPF1-207ENST00000599848 MRPL12P52815 198 aaKnown RBP24.03■■□□□ 1.44
UPF1-207ENST00000599848 KRT85P78386 507 aa24.03■■□□□ 1.44
UPF1-207ENST00000599848 ABCC11Q96J66 1382 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 PTCD1O75127 700 aaKnown RBP24.02■■□□□ 1.44
UPF1-207ENST00000599848 KRT28Q7Z3Y7 464 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 CCDC191Q8NCU4 936 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 TTC21BQ7Z4L5 1316 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 IFNL2Q8IZJ0 200 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 FEZ1Q99689 392 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 CCDC39Q9UFE4 941 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 C6orf229H3BNL8 230 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 GSTO1P78417 241 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 KIF1BPQ96EK5 621 aa24.02■■□□□ 1.44
UPF1-207ENST00000599848 TMEM266Q2M3C6 531 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms