RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.34■■□□□ 1.17
LIG1-214ENST00000597146 USP31Q70CQ4 1352 aa22.34■■□□□ 1.17
LIG1-214ENST00000597146 ANKRD36BQ8N2N9 1353 aa22.34■■□□□ 1.17
LIG1-214ENST00000597146 TAF1LQ8IZX4 1826 aa22.33■■□□□ 1.16
LIG1-214ENST00000597146 PRIM1P49642 420 aaKnown RBP22.32■■□□□ 1.16
LIG1-214ENST00000597146 NME9Q86XW9 330 aa22.32■■□□□ 1.16
LIG1-214ENST00000597146 CCNL1Q9UK58 526 aaPredicted RBP22.32■■□□□ 1.16
LIG1-214ENST00000597146 WWC3Q9ULE0 1092 aa22.3■■□□□ 1.16
LIG1-214ENST00000597146 CD163L1Q9NR16 1453 aa22.29■■□□□ 1.16
LIG1-214ENST00000597146 TOGARAM1Q9Y4F4 1720 aa22.28■■□□□ 1.16
LIG1-214ENST00000597146 SBNO2Q9Y2G9 1366 aa22.27■■□□□ 1.16
LIG1-214ENST00000597146 KIF3CO14782 793 aa22.27■■□□□ 1.16
LIG1-214ENST00000597146 CD2APQ9Y5K6 639 aa22.27■■□□□ 1.16
LIG1-214ENST00000597146 LTV1Q96GA3 475 aaPredicted RBP22.26■■□□□ 1.15
LIG1-214ENST00000597146 MEGF6O75095 1541 aa22.25■■□□□ 1.15
LIG1-214ENST00000597146 WDR90Q96KV7 1748 aa22.24■■□□□ 1.15
LIG1-214ENST00000597146 IGSF1Q8N6C5 1336 aa22.23■■□□□ 1.15
LIG1-214ENST00000597146 CICQ96RK0 1608 aaPredicted RBP22.23■■□□□ 1.15
LIG1-214ENST00000597146 USP47Q96K76 1375 aa22.23■■□□□ 1.15
LIG1-214ENST00000597146 C4BP0C0L5 1744 aa22.23■■□□□ 1.15
LIG1-214ENST00000597146 UBR3Q6ZT12 1888 aa22.22■■□□□ 1.15
LIG1-214ENST00000597146 APLP1P51693 650 aa22.2■■□□□ 1.14
LIG1-214ENST00000597146 EDC4Q6P2E9 1401 aaKnown RBP22.18■■□□□ 1.14
LIG1-214ENST00000597146 DNAJC5GQ8N7S2 189 aa22.18■■□□□ 1.14
LIG1-214ENST00000597146 IP6K1Q92551 441 aa22.18■■□□□ 1.14
LIG1-214ENST00000597146 ROCK2O75116 1388 aaKnown RBP22.17■■□□□ 1.14
LIG1-214ENST00000597146 ZCRB1Q8TBF4 217 aaKnown RBP22.17■■□□□ 1.14
LIG1-214ENST00000597146 ITGB4P16144 1822 aa22.17■■□□□ 1.14
LIG1-214ENST00000597146 KIAA1551Q9HCM1 1747 aa22.17■■□□□ 1.14
LIG1-214ENST00000597146 AMIGO3Q86WK7 504 aa22.16■■□□□ 1.14
LIG1-214ENST00000597146 N4BP2Q86UW6 1770 aaPredicted RBP22.15■■□□□ 1.14
LIG1-214ENST00000597146 CAPN15O75808 1086 aa22.14■■□□□ 1.13
LIG1-214ENST00000597146 L3MBTL2Q969R5 705 aa22.14■■□□□ 1.13
LIG1-214ENST00000597146 A0A1W2PP64 1363 aa22.13■■□□□ 1.13
LIG1-214ENST00000597146 PALLDQ8WX93 1383 aa22.13■■□□□ 1.13
LIG1-214ENST00000597146 SMIM5Q71RC9 77 aa22.13■■□□□ 1.13
LIG1-214ENST00000597146 TMC1Q8TDI8 760 aa22.13■■□□□ 1.13
LIG1-214ENST00000597146 KIF13BQ9NQT8 1826 aa22.13■■□□□ 1.13
LIG1-214ENST00000597146 COL13A1Q5TAT6 717 aaPredicted RBP22.12■■□□□ 1.13
LIG1-214ENST00000597146 FLAD1Q8NFF5 587 aa22.12■■□□□ 1.13
LIG1-214ENST00000597146 PHF14O94880 888 aa22.11■■□□□ 1.13
LIG1-214ENST00000597146 HOXC9P31274 260 aa22.11■■□□□ 1.13
LIG1-214ENST00000597146 HDGFL2Q7Z4V5 671 aaPredicted RBP22.11■■□□□ 1.13
LIG1-214ENST00000597146 MAP3K19Q56UN5 1328 aa22.1■■□□□ 1.13
LIG1-214ENST00000597146 TOMM70O94826 608 aa22.1■■□□□ 1.13
LIG1-214ENST00000597146 SLC12A5Q9H2X9 1139 aa22.1■■□□□ 1.13
LIG1-214ENST00000597146 PCNTO95613 3336 aa22.1■■□□□ 1.13
LIG1-214ENST00000597146 HTRA3P83110 453 aa22.09■■□□□ 1.13
LIG1-214ENST00000597146 USHBP1Q8N6Y0 703 aa22.09■■□□□ 1.13
LIG1-214ENST00000597146 MAP2P11137 1827 aaKnown RBP22.08■■□□□ 1.13
LIG1-214ENST00000597146 FBLN1P23142 703 aa22.08■■□□□ 1.13
LIG1-214ENST00000597146 AK7Q96M32 723 aa22.08■■□□□ 1.13
LIG1-214ENST00000597146 PXDNLA1KZ92 1463 aa22.08■■□□□ 1.12
LIG1-214ENST00000597146 NMRK2Q9NPI5 230 aa22.07■■□□□ 1.12
LIG1-214ENST00000597146 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.06■■□□□ 1.12
LIG1-214ENST00000597146 BRCA1P38398 1863 aaKnown RBP22.06■■□□□ 1.12
LIG1-214ENST00000597146 PKD1L3Q7Z443 1732 aa22.06■■□□□ 1.12
LIG1-214ENST00000597146 AMPHP49418 695 aa22.05■■□□□ 1.12
LIG1-214ENST00000597146 NBPF6Q5VWK0 638 aa22.05■■□□□ 1.12
LIG1-214ENST00000597146 MPRIPQ6WCQ1 1025 aa22.05■■□□□ 1.12
LIG1-214ENST00000597146 NBPF4Q96M43 638 aa22.05■■□□□ 1.12
LIG1-214ENST00000597146 NSD3Q9BZ95 1437 aa22.03■■□□□ 1.12
LIG1-214ENST00000597146 KLRG1Q96E93 195 aa22.02■■□□□ 1.12
LIG1-214ENST00000597146 TERF2IPQ9NYB0 399 aa22.02■■□□□ 1.12
LIG1-214ENST00000597146 PCDH11XQ9BZA7 1347 aa22.01■■□□□ 1.11
LIG1-214ENST00000597146 PCDH11YQ9BZA8 1340 aa22.01■■□□□ 1.11
LIG1-214ENST00000597146 RTL1A6NKG5 1358 aa22■■□□□ 1.11
LIG1-214ENST00000597146 TNS4Q8IZW8 715 aa22■■□□□ 1.11
LIG1-214ENST00000597146 JMYQ8N9B5 988 aa22■■□□□ 1.11
LIG1-214ENST00000597146 RAPGEF4Q8WZA2 1011 aa22■■□□□ 1.11
LIG1-214ENST00000597146 CGNL1Q0VF96 1302 aa22■■□□□ 1.11
LIG1-214ENST00000597146 ARFGEF1Q9Y6D6 1849 aa21.99■■□□□ 1.11
LIG1-214ENST00000597146 LINC00116Q8NCU8 138 aa21.99■■□□□ 1.11
LIG1-214ENST00000597146 COG3Q96JB2 828 aa21.99■■□□□ 1.11
LIG1-214ENST00000597146 BCS1LQ9Y276 419 aa21.99■■□□□ 1.11
LIG1-214ENST00000597146 TATP17735 454 aaPredicted RBP21.98■■□□□ 1.11
LIG1-214ENST00000597146 SSFA2P28290 1259 aa21.98■■□□□ 1.11
LIG1-214ENST00000597146 RRS1Q15050 365 aaKnown RBP21.98■■□□□ 1.11
LIG1-214ENST00000597146 RBM46Q8TBY0 533 aaKnown RBP21.98■■□□□ 1.11
LIG1-214ENST00000597146 HMGB2P26583 209 aaKnown RBP21.97■■□□□ 1.11
LIG1-214ENST00000597146 SIN3AQ96ST3 1273 aa21.97■■□□□ 1.11
LIG1-214ENST00000597146 SMG6Q86US8 1419 aaKnown RBP21.97■■□□□ 1.11
LIG1-214ENST00000597146 TNRC6CQ9HCJ0 1690 aaKnown RBP21.96■■□□□ 1.11
LIG1-214ENST00000597146 CYP27B1O15528 508 aa21.96■■□□□ 1.11
LIG1-214ENST00000597146 MMP10P09238 476 aa21.96■■□□□ 1.11
LIG1-214ENST00000597146 PRELPP51888 382 aa21.96■■□□□ 1.11
LIG1-214ENST00000597146 SMARCC1Q92922 1105 aaPredicted RBP21.96■■□□□ 1.11
LIG1-214ENST00000597146 C10orf71Q711Q0 1435 aa21.96■■□□□ 1.11
LIG1-214ENST00000597146 KCPQ6ZWJ8 1503 aa21.96■■□□□ 1.11
LIG1-214ENST00000597146 ARHGAP27Q6ZUM4 889 aa21.95■■□□□ 1.1
LIG1-214ENST00000597146 C4AP0C0L4 1744 aa21.94■■□□□ 1.1
LIG1-214ENST00000597146 A0A0G2JLW4 131 aa21.94■■□□□ 1.1
LIG1-214ENST00000597146 GNPATO15228 680 aa21.94■■□□□ 1.1
LIG1-214ENST00000597146 C16orf71Q8IYS4 520 aaPredicted RBP21.93■■□□□ 1.1
LIG1-214ENST00000597146 PIGBQ92521 554 aa21.93■■□□□ 1.1
LIG1-214ENST00000597146 KIF20BQ96Q89 1820 aa21.92■■□□□ 1.1
LIG1-214ENST00000597146 LOC102724428A0A0B4J2F2 783 aa21.91■■□□□ 1.1
LIG1-214ENST00000597146 SIK1P57059 783 aa21.91■■□□□ 1.1
LIG1-214ENST00000597146 ITPK1Q13572 414 aa21.91■■□□□ 1.1
LIG1-214ENST00000597146 CARD11Q9BXL7 1154 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms