RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 COG3Q96JB2 828 aa16.34■□□□□ 0.21
VRK3-209ENST00000594948 STAG3Q9UJ98 1225 aa16.34■□□□□ 0.21
VRK3-209ENST00000594948 ERBB4Q15303 1308 aa16.34■□□□□ 0.21
VRK3-209ENST00000594948 N4BP2Q86UW6 1770 aaPredicted RBP16.33■□□□□ 0.21
VRK3-209ENST00000594948 FBXO31Q5XUX0 539 aaPredicted RBP16.33■□□□□ 0.21
VRK3-209ENST00000594948 NME9Q86XW9 330 aa16.33■□□□□ 0.21
VRK3-209ENST00000594948 ELL2O00472 640 aaPredicted RBP16.33■□□□□ 0.2
VRK3-209ENST00000594948 FBLN1P23142 703 aa16.33■□□□□ 0.2
VRK3-209ENST00000594948 WAPLQ7Z5K2 1190 aa16.33■□□□□ 0.2
VRK3-209ENST00000594948 DDX49Q9Y6V7 483 aaKnown RBP16.33■□□□□ 0.2
VRK3-209ENST00000594948 ANP32BQ92688 251 aaKnown RBP16.32■□□□□ 0.2
VRK3-209ENST00000594948 RTL1A6NKG5 1358 aa16.32■□□□□ 0.2
VRK3-209ENST00000594948 FMN2Q9NZ56 1722 aa16.32■□□□□ 0.2
VRK3-209ENST00000594948 CACNA1FO60840 1977 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 CHL1O00533 1208 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
VRK3-209ENST00000594948 CEP85Q6P2H3 762 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 FOXD4L1Q9NU39 408 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 ST18O60284 1047 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 HS1BP3Q53T59 392 aa16.31■□□□□ 0.2
VRK3-209ENST00000594948 RRP9O43818 475 aaKnown RBP16.3■□□□□ 0.2
VRK3-209ENST00000594948 REC8O95072 547 aa16.3■□□□□ 0.2
VRK3-209ENST00000594948 TPM2P07951 284 aa16.3■□□□□ 0.2
VRK3-209ENST00000594948 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.3■□□□□ 0.2
VRK3-209ENST00000594948 OSBPL3Q9H4L5 887 aa16.3■□□□□ 0.2
VRK3-209ENST00000594948 CCDC61Q9Y6R9 512 aa16.3■□□□□ 0.2
VRK3-209ENST00000594948 NUDT16Q96DE0 195 aaKnown RBP16.29■□□□□ 0.2
VRK3-209ENST00000594948 MSH6P52701 1360 aa16.29■□□□□ 0.2
VRK3-209ENST00000594948 SDSP20132 328 aa16.29■□□□□ 0.2
VRK3-209ENST00000594948 ZSCAN30Q86W11 494 aa16.29■□□□□ 0.2
VRK3-209ENST00000594948 LMBRD1Q9NUN5 540 aa16.29■□□□□ 0.2
VRK3-209ENST00000594948 FAM83GA6ND36 823 aa16.28■□□□□ 0.2
VRK3-209ENST00000594948 HMMRO75330 724 aa16.28■□□□□ 0.2
VRK3-209ENST00000594948 PEAK1Q9H792 1746 aa16.28■□□□□ 0.2
VRK3-209ENST00000594948 SENP3Q9H4L4 574 aaPredicted RBP16.27■□□□□ 0.2
VRK3-209ENST00000594948 OVOS2A0A0J9YW53 1432 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 OVOS2Q6IE36 1432 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 ZRANB1Q9UGI0 708 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 CRB1P82279 1406 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 ERC2O15083 957 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 TERF1P54274 439 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 GLIPR1L2Q4G1C9 344 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 MCTP1Q6DN14 999 aa16.26■□□□□ 0.19
VRK3-209ENST00000594948 C16orf71Q8IYS4 520 aaPredicted RBP16.26■□□□□ 0.19
VRK3-209ENST00000594948 ARHGEF10O15013 1369 aa16.25■□□□□ 0.19
VRK3-209ENST00000594948 FAM208AQ9UK61 1670 aaKnown RBP16.25■□□□□ 0.19
VRK3-209ENST00000594948 MCM2P49736 904 aa16.25■□□□□ 0.19
VRK3-209ENST00000594948 METP08581 1390 aa16.25■□□□□ 0.19
VRK3-209ENST00000594948 DCTN1Q14203 1278 aa16.24■□□□□ 0.19
VRK3-209ENST00000594948 EIF4A2Q14240 407 aaKnown RBP16.24■□□□□ 0.19
VRK3-209ENST00000594948 RRS1Q15050 365 aaKnown RBP16.24■□□□□ 0.19
VRK3-209ENST00000594948 ZSCAN23Q3MJ62 389 aa16.24■□□□□ 0.19
VRK3-209ENST00000594948 LRRC37A3O60309 1634 aa16.24■□□□□ 0.19
VRK3-209ENST00000594948 XRN1Q8IZH2 1706 aaKnown RBP16.24■□□□□ 0.19
VRK3-209ENST00000594948 TTC21BQ7Z4L5 1316 aa16.24■□□□□ 0.19
VRK3-209ENST00000594948 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
VRK3-209ENST00000594948 IL17RAQ96F46 866 aa16.23■□□□□ 0.19
VRK3-209ENST00000594948 PDLIM2Q96JY6 352 aa16.23■□□□□ 0.19
VRK3-209ENST00000594948 SSH2Q76I76 1423 aa16.23■□□□□ 0.19
VRK3-209ENST00000594948 OFD1O75665 1012 aa16.22■□□□□ 0.19
VRK3-209ENST00000594948 SULT6B1Q6IMI4 303 aa16.22■□□□□ 0.19
VRK3-209ENST00000594948 OTUD7AQ8TE49 926 aaPredicted RBP16.22■□□□□ 0.19
VRK3-209ENST00000594948 USP31Q70CQ4 1352 aa16.22■□□□□ 0.19
VRK3-209ENST00000594948 DIP2BQ9P265 1576 aa16.22■□□□□ 0.19
VRK3-209ENST00000594948 HSP90AA2PQ14568 343 aaPredicted RBP16.22■□□□□ 0.19
VRK3-209ENST00000594948 MEIS3Q99687 375 aa16.22■□□□□ 0.19
VRK3-209ENST00000594948 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.21■□□□□ 0.19
VRK3-209ENST00000594948 HDGFP51858 240 aaKnown RBP16.21■□□□□ 0.19
VRK3-209ENST00000594948 CAVIN1Q6NZI2 390 aaKnown RBP16.21■□□□□ 0.19
VRK3-209ENST00000594948 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.21■□□□□ 0.19
VRK3-209ENST00000594948 SALL3Q9BXA9 1300 aa16.2■□□□□ 0.18
VRK3-209ENST00000594948 EPB41L2O43491 1005 aaKnown RBP16.2■□□□□ 0.18
VRK3-209ENST00000594948 MBD3O95983 291 aa16.2■□□□□ 0.18
VRK3-209ENST00000594948 MSNP26038 577 aaKnown RBP16.2■□□□□ 0.18
VRK3-209ENST00000594948 ANAPC15P60006 121 aa16.2■□□□□ 0.18
VRK3-209ENST00000594948 ZDHHC9Q9Y397 364 aa16.2■□□□□ 0.18
VRK3-209ENST00000594948 UBR1Q8IWV7 1749 aa16.2■□□□□ 0.18
VRK3-209ENST00000594948 PRR36Q9H6K5 1346 aa16.19■□□□□ 0.18
VRK3-209ENST00000594948 SMARCA5O60264 1052 aaPredicted RBP16.19■□□□□ 0.18
VRK3-209ENST00000594948 PDE1AP54750 535 aa16.19■□□□□ 0.18
VRK3-209ENST00000594948 AEBP1Q8IUX7 1158 aa16.19■□□□□ 0.18
VRK3-209ENST00000594948 RIMS1Q86UR5 1692 aaKnown RBP16.19■□□□□ 0.18
VRK3-209ENST00000594948 MCM5P33992 734 aa16.19■□□□□ 0.18
VRK3-209ENST00000594948 CUL4AQ13619 759 aa16.19■□□□□ 0.18
VRK3-209ENST00000594948 PXDNLA1KZ92 1463 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 USP6P35125 1406 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 SOS1Q07889 1333 aaPredicted RBP16.18■□□□□ 0.18
VRK3-209ENST00000594948 PLEKHG3A1L390 1219 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 ZNF500O60304 480 aaPredicted RBP16.18■□□□□ 0.18
VRK3-209ENST00000594948 PKP1Q13835 747 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 KRT24Q2M2I5 525 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 LRSAM1Q6UWE0 723 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 TXNDC2Q86VQ3 553 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 ZGPATQ8N5A5 531 aaKnown RBP16.18■□□□□ 0.18
VRK3-209ENST00000594948 GPT2Q8TD30 523 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 INTS4Q96HW7 963 aaKnown RBP16.18■□□□□ 0.18
VRK3-209ENST00000594948 RBSNQ9H1K0 784 aa16.18■□□□□ 0.18
VRK3-209ENST00000594948 NOL7Q9UMY1 257 aaKnown RBP16.18■□□□□ 0.18
VRK3-209ENST00000594948 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
VRK3-209ENST00000594948 NCLP19338 710 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms